PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna14556.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 228aa MW: 25468.2 Da PI: 7.8691 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 55.6 | 1.1e-17 | 157 | 211 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++r +r++kNRe+A rsR+RK+a++ Le +++ L +eN++L+ e+e+l++ +a+ mrna14556.1-v1.0-hybrid 157 DRRHKRMIKNRESAARSRARKQAYTNDLEIRIQLLMEENERLRRENEQLSDAAAS 211 6899**********************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-14 | 154 | 218 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.358 | 156 | 207 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.5E-14 | 157 | 208 | No hit | No description |
CDD | cd14707 | 7.17E-25 | 158 | 212 | No hit | No description |
Pfam | PF00170 | 2.6E-15 | 158 | 211 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.38E-12 | 158 | 207 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 161 | 176 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEEVWKDINL ASLSNANNSP NFRNMTLQDF LARPFANVVS PTPDHHHHNN NNHITLNSPP 60 PPPPPPPPAT VLSLNHLDSD QFQLFCIENL NTTRPFVNLN HPNTSTVSEK SFNGAYPFEG 120 LGSQSSPSPG LVMPSGFGYG NERLPEPDDR SNFGGGDRRH KRMIKNRESA ARSRARKQAY 180 TNDLEIRIQL LMEENERLRR ENEQLSDAAA SQLPKKHSLN RSSTAPF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna14556.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289074.1 | 1e-166 | PREDICTED: protein FD | ||||
TrEMBL | A0A2P6RLS8 | 4e-81 | A0A2P6RLS8_ROSCH; Putative transcription factor bZIP family | ||||
STRING | XP_004289074.1 | 1e-165 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3755 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 2e-23 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna14556.1-v1.0-hybrid |