PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna14427.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 282aa MW: 31321.5 Da PI: 5.5217

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna14427.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00077	251	274	7	30
HHHHHHHHHHHHHHHHHHCTSCCC CS HLH 7 erErrRRdriNsafeeLrellPka 30 E RR + N + Lrel+P++ mrna14427.1-v1.0-hybrid 251 LTEHERRVKTNRQYTALRELVPNP 274 57999*****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MYVDSSAAGA CSNVDPNNTN NNPMSESAPE VVLLNHSHNT TTFAHEENFN RLSMEEELSN 60 YYHNTAMEIE QFENETDQFN TSNPHLVNPF ETHQATNWDN NDEMQQQSSS PDMLSLFYSP 120 SSSVLPHSSI TFTNPKNLGG CFPGSFGYGA LLEPPSGAAV SSVMYDPMIH LNQQPPQSQP 180 PLFRELLQSL PHRYNLGGPS NGSILFSNGR NEEEHGSRQL FENGVMEFSK EMKPCGRGRG 240 RGRGGNKGTK LTEHERRVKT NRQYTALREL VPNPTKVLIS L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna14427.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024184611.1	1e-112	transcription factor bHLH91-like
TrEMBL	A0A2P6SCU1	1e-111	A0A2P6SCU1_ROSCH; Putative transcription factor bHLH family
STRING	XP_004305390.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3743	32	62

Link Out ? help Back to Top
Phytozome	mrna14427.1-v1.0-hybrid