PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna14413.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25463.8 Da PI: 9.688 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.7 | 2.6e-12 | 22 | 58 | 9 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r+ + R+ i+KK eELS+LC+++v+vi+f +t+k mrna14413.1-v1.0-hybrid 22 RKKMYQDRKMNIFKKGEELSILCGIDVLVILFQPTDK 58 6667899*************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0072 | 7 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.101 | 17 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-11 | 18 | 91 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-11 | 19 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAVPPSPNNR NMELLPDQRR ARKKMYQDRK MNIFKKGEEL SILCGIDVLV ILFQPTDKSS 60 TAQPAAETWP KNPTEVKRII RRYKEKTAST HASSHRTSPL TIRGTTSTPS SSSSSPQSVP 120 EKRKYINLDL SLSGFSDSRT KVLKEDKGKK NLHVQDDDEY INPQEACMDM QFKHPTIWDH 180 AGRGELYDHG ALMFEYDDHQ AKLASLEAKQ KAITERIASL QAAHA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna14413.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024196056.1 | 1e-107 | uncharacterized protein LOC112199245 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22185 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 2e-12 | AGAMOUS-like 82 |
Link Out ? help Back to Top | |
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Phytozome | mrna14413.1-v1.0-hybrid |