PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14412.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 709aa    MW: 79008.2 Da    PI: 7.7001
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14412.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.2e-1622108599
                              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              l  +d+++   +++pkkf+ ++g++   s   +l+ +sg +W+v+l  +++ g+++++kGW eF k   L+ g f+vF+++g+s f
  mrna14412.1-v1.0-hybrid  22 L--EDTSRDIKIRIPKKFVMKYGQDV--SNSARLKLPSGAEWQVEL--TRCNGKVWFEKGWPEFSKFFSLDYGNFLVFRYEGNSVF 101
                              3..788888899**********8774..457***************..**********************************9999 PP

                              ..EEEEE-S CS
                       B3  91 elvvkvfrk 99 
                                 v +f++
  mrna14412.1-v1.0-hybrid 102 --QVCIFDR 108
                              ..9999997 PP
2B364.71.4e-20229322299
                              EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              fkv +++++ +++ l lp kf++e+++k +    +tl+ ++g++W+vk+  +  +++ +l+ GW  Fvk+n Lk+gD++vF l+++
  mrna14412.1-v1.0-hybrid 229 FKVVMQPSYVQQSYLGLPAKFFKENQIKAAA--YVTLRVSNGKTWSVKF--NYEQSKATLQHGWLAFVKDNCLKVGDVCVFVLIKD 310
                              45666666666667***********998655..79999***********..66666789*************************99 PP

                              SEE..EEEEE-S CS
                       B3  88 sefelvvkvfrk 99 
                               +  + v +fr+
  mrna14412.1-v1.0-hybrid 311 INLLFQVEIFRA 322
                              666688888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-239109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2210108IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-1715107No hitNo description
PROSITE profilePS5086313.08416109IPR003340B3 DNA binding domain
SMARTSM010191.6E-1417109IPR003340B3 DNA binding domain
PfamPF023625.3E-1323108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-25224323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-23225322IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-21228321No hitNo description
PROSITE profilePS5086315.115228323IPR003340B3 DNA binding domain
SMARTSM010192.5E-16229323IPR003340B3 DNA binding domain
PfamPF023628.9E-18229322IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-10402483IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-9404482IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-8407486No hitNo description
PROSITE profilePS508638.698408505IPR003340B3 DNA binding domain
SMARTSM010190.016408505IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MGSLRKHQTF SSTTPQFFQI ILEDTSRDIK IRIPKKFVMK YGQDVSNSAR LKLPSGAEWQ  60
VELTRCNGKV WFEKGWPEFS KFFSLDYGNF LVFRYEGNSV FQVCIFDRTA TEIDYPIAMP  120
GMEETDHEDE EGDDISIEIL EDSPLVPRPE VKREKSPLPC PPSYKKMRTS WSDKTVETMS  180
ENDVGGSSPT RKCLNRTLED LGEFQSLNND EKARALLGAD GFISEKAHFK VVMQPSYVQQ  240
SYLGLPAKFF KENQIKAAAY VTLRVSNGKT WSVKFNYEQS KATLQHGWLA FVKDNCLKVG  300
DVCVFVLIKD INLLFQVEIF RATIFPVLAG HSRGAAVHVE DNRSSMKVES DCGMDCGMAS  360
VNPSPLDIGN KNKGSETSGE VAERHCSFLR VPRDNLEAAS KFIPKNPFFR VTIRAYHLAR  420
SGVNVPANFM KKSIKRLQEK QTVMLQVKNS LWPVNLVPRT QGSAGRLCSG WITFAREHDL  480
KEVVVLPTFY NRDDAMASLI LSGSISEGKE CVTKGADRGS QSCSWENSER SGEGRREELR  540
RKAKMSLVDY ASSDDDVSEE EDDKNKENEP AQAPMEEPHP PSRSQPQSVV SSYQRPESAA  600
HLSAPSVQKL PDASQLFDSP DFSPNMMSGS YHSSHVGGES ASRKRESNSI ASSIPRSKVP  660
RGNLPHSRNV PDTLGGMLVP PQLNGRSNVV TEDVSKLFVK KPVGGSPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1538544LRRKAKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14412.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305403.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A2P6RVX80.0A0A2P6RVX8_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004305403.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-36B3 family protein