PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna14402.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 205aa MW: 23027.2 Da PI: 9.0757

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna14402.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.2	2.1e-13	15	46	14	45
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgk 45 +R+ i+KKAeELS+LC+++vavi+f + +k mrna14402.1-v1.0-hybrid 15 YRRKMNIFKKAEELSILCGIDVAVILFQPADK 46 68************************987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.998	1	46	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0041	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.02E-12	8	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.2E-12	15	48	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.24E-10	16	52	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MELLPDQRRA RKKMYRRKMN IFKKAEELSI LCGIDVAVIL FQPADKSTTA PPAVETWPKD 60 PTEIKRIIRR YQAKSSCSHA SSSNTSLPAI KDPSSSSPSP SVLGKINCSN LDLSLSGFYD 120 SRMKILKDDR GKKKLHVDSD ENINSEEALG MQYEFHTNWN VAGENEMYKV DNELRIGYHD 180 HEAKLASLEA KREAITKRIA SLEG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna14402.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024196142.1	1e-106	uncharacterized protein LOC112199341

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22185	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-09	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	mrna14402.1-v1.0-hybrid