PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14276.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SRS
Protein Properties Length: 299aa    MW: 31586.3 Da    PI: 8.8981
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14276.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702181.92.7e-561132593154
                   DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalss 88 
                              sg  +C+dCGn+akk+C+++RCRtCC+ rg+dC+thv+stWvpaa+rrerq   + a + + as    +  +  ++ +k+   +  
  mrna14276.1-v1.0-hybrid 113 SGLRACKDCGNRAKKGCEYTRCRTCCRGRGYDCSTHVRSTWVPAARRRERQMGVTVAVTGDVASGGGGEGSSGSSSVAKRPRFMM- 197
                              56679*********************************************99999988777665533333333332222222222. PP

                   DUF702  89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                 ss++++     +slP++v+++avf+c rv+++++ge+e+aYq++v+i+GhvfkG+Lyd+G+++
  mrna14276.1-v1.0-hybrid 198 ---SSKNAN-ANLRQSLPDQVRAPAVFKCHRVTAISNGEAEIAYQATVKISGHVFKGLLYDRGIDK 259
                              ...233333.233467***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.4E-55116258IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.5E-24118159IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-26210257IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLGLRDILLI APNASSMHQQ TQPISSDHLP SSTALGVGLG IFPLLTATPC GPSAPTAEGN  60
PDNSRFWSLR TYPELNSSKQ DMLSFGNHAE SQQVVKSDDR NLNGDGGGGG EESGLRACKD  120
CGNRAKKGCE YTRCRTCCRG RGYDCSTHVR STWVPAARRR ERQMGVTVAV TGDVASGGGG  180
EGSSGSSSVA KRPRFMMSSK NANANLRQSL PDQVRAPAVF KCHRVTAISN GEAEIAYQAT  240
VKISGHVFKG LLYDRGIDKK NEYPCISHLH LGSGSNQRNG DSSSPPAPPS NVCMASTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14276.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307109.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X2
TrEMBLA0A2P6S9S51e-170A0A2P6S9S5_ROSCH; Putative transcription factor STY-LRP1 family
STRINGXP_004307109.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-44Lateral root primordium (LRP) protein-related