PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14244.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 335aa    MW: 37006.9 Da    PI: 9.9804
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14244.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.61.2e-1636119186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyf 82 
                              +W++  v  L+ea++ ++   +r+klk+++We+v++++ +++g+++spk   qCk+k+e+++kry+ + +++ +      s++p++
  mrna14244.1-v1.0-hybrid  36 EWSEGAVSSLLEAYEAKWVLRNRAKLKGHDWEDVARHVsSRGGCSKSPKtqtQCKNKIESMKKRYRSESATADG------SSWPLY 115
                              5*************************************878889987754449****************99997......469999 PP

                 trihelix  83 dqle 86 
                               +l+
  mrna14244.1-v1.0-hybrid 116 PRLD 119
                              9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2034119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEKEGNQDQT PSLLSNNLES PRSKPLIGSD RLKRDEWSEG AVSSLLEAYE AKWVLRNRAK  60
LKGHDWEDVA RHVSSRGGCS KSPKTQTQCK NKIESMKKRY RSESATADGS SWPLYPRLDL  120
LLRGSGPPPP TAAAATVVAA VAPPAPPHQP PLVTHQSNHA LMLLEPSVPV SPPTQPALPP  180
PPPPHLGTAQ NSFGSDGVDR DAKEEEAGMK LSDHASDKNP LEIDSSTPAL YSDKEKLRSK  240
RMKRKIEKKT RRRREELEIA ESIRWLAEVV VRSEQSRMDT MREIERMRVE AEAKRGEMDL  300
KRTEIIANTQ LEIARIFAAG AGKGVDSSLR IGRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14244.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329714e-33AL132971.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T12E18.
GenBankAL1386564e-33AL138656.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T14E10.
GenBankAY0843914e-33AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence.
GenBankAY1400414e-33AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds.
GenBankBT0063224e-33BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds.
GenBankCP0026864e-33CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307092.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A2P6SA480.0A0A2P6SA48_ROSCH; Putative transcription factor Trihelix family
STRINGXP_004307092.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-100sequence-specific DNA binding transcription factors