PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14237.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 660aa    MW: 74222.7 Da    PI: 7.7572
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14237.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1514.8e-1677225190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....................................... 47 
                              kfY  Y+  +GFs r++k  ++   g + +r++vCskeg r++++++                                       
  mrna14237.1-v1.0-hybrid  77 KFYAYYSLAMGFSFRREKLDRN-SVGLVARRQLVCSKEGLRKKKNSNpapsfvsevissaqnyssphgsklvcmkkkvsqrpvved 161
                              6******************999.7777*****************999*************************************** PP

                     FAR1  48 ....................tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                                                  ++++  +r++tr +C+a+++ k+ + +g+++v ++ +eHnH+la
  mrna14237.1-v1.0-hybrid 162 adkrsmkrpqtqfgdgghekRRQQYPERVHTRGNCRARITAKRCReTGVFHVVEFITEHNHDLA 225
                              ****************9644444444999**************999****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1277225IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.94357395IPR007527Zinc finger, SWIM-type
SMARTSM005757.7E-4370397IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MEECGMRFSE PNYHDGAVDE DDLSNEYEEV CLDEEASQTA NMVESLDCLH FNGKKYEDLK  60
SSDMIGVEFK DYESVDKFYA YYSLAMGFSF RREKLDRNSV GLVARRQLVC SKEGLRKKKN  120
SNPAPSFVSE VISSAQNYSS PHGSKLVCMK KKVSQRPVVE DADKRSMKRP QTQFGDGGHE  180
KRRQQYPERV HTRGNCRARI TAKRCRETGV FHVVEFITEH NHDLAKADFV PFLQSHRKVR  240
DHDVAPRVAF RKVSVGGVGR YMELCEVLPR MDKTIERIRF NGLNDDFKSM NSHPIIGSHM  300
RCIQVQVGAK FTHDIFLLIK DQILFESKFI VADRLCDENR GSTLFIVTQY GKAERTWQVT  360
HYQAHPDISF VCSCHLFESD GIPCCHIFTA MKTMNMTSLP ESLVKQRWTK QACTINTSGL  420
MSGMMPARDL QLARFGQMMG DCAQICHSAS LSDEAYEEIN NSLSRLMVRS NAFKRCKNSN  480
PPETVDGLHP NVIGDLNVCK TKGTRSKHST STEVEGEQPV GKGCGFCSRP GHNTRTCPLA  540
AQNRENTENP PLERAHNSLI DAIATSGRPR SLQSTPGFNI HKGQGGFASS RQTDEDDVFL  600
GQTSSQHMFH HIEESRTLEF FTGHHTFLGS LNAAPSVNQN VIMSSSNTHH GGDTVRLSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14237.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308577.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P6PJF81e-168A0A2P6PJF8_ROSCH; Putative transcription factor FAR family
STRINGXP_004308577.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-10FAR1-related sequence 5