PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14220.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 335aa    MW: 37188.7 Da    PI: 8.4231
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14220.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.7e-104588245
                             XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                             k+ k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  mrna14220.1-v1.0-hybrid 45 KDQKTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLSQLEQEL 88
                             567899*************************9877777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.4E-93791No hitNo description
SMARTSM003384.2E-844141IPR004827Basic-leucine zipper domain
PfamPF001701.8E-74688IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.3814690IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.88E-74891No hitNo description
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141443.3E-33131206IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MADSPRTDIS TDVDTDDKNQ MYDRGDQYAI TAAVSDSSDK SKDPKDQKTL RRLAQNREAA  60
RKSRLRKKAY VQQLETSRLK LSQLEQELQR ARQQGIFISS SGGDAAHSTS GNGAMAFDVE  120
YGRWLEDQNR QINELRSAVN SHASDAELRI IVDGILAHYD EIFRLKGTAA KADVFHLLSG  180
MWKTPAERCF LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI TNLQQSSQQA EDALSQGMEA  240
LQQSLAETLS SGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIRQADNL RQQTLQQMHR  300
ILTTRQSARA LLAINDYFSR LRALSSLWLA RPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14220.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5981380.0FJ598138.1 Malus hupehensis TGA1a-related protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307087.10.0PREDICTED: transcription factor TGA2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2P6SA640.0A0A2P6SA64_ROSCH; Putative transcription factor bZIP family
STRINGXP_004307087.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-152TGACG motif-binding factor 6