PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14142.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 463aa    MW: 52139.2 Da    PI: 10.0209
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14142.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.67.1e-07249274227
                     FAR1   2 fYneYAkevGFsvrkskskkskrnge 27 
                              fYneYA+++GFsvrk++  k+k++ge
  mrna14142.1-v1.0-hybrid 249 FYNEYARKMGFSVRKEQVVKNKKTGE 274
                              9*****************99988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522001.44E-2625148IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101401.7E-93292IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010412.5723491IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015825.8E-133592IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002556.4E-1335145IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS501048.78894145IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEGSEYSAWC SFRSEWGTYR PHRSVSSDRS HPQWKYDVFL SFRGDDTRTG FTDHLYEKLV  60
WRGIRAFRDD PDIEKGSTIS AELLAAIKDS RTSRLFPVFY HVDPSDVRKQ TGPFAEAFAK  120
HEQDFKADPK KVYWWRQALI SVSQVAGWTA SKYRYESELI KEIVDVIWEK VYPPFKLLDS  180
TDNLFGIDFK LEYIYLLLYT SISDVRFLGI WGMGGVWITN IGGESSLADT SCKPKFGMEF  240
DYEEAAYIFY NEYARKMGFS VRKEQVVKNK KTGEDDQGSA PITEDTCVQA KGFRKRGGSR  300
GRKRLTSQLE RAYMRKSAQM RQLLGKKGFS DVDIQENGSK TGRQASGGRK NSETTSRHAP  360
SSEEVAANIS TDNVADVQAN GSKRRRQASG GRKSTKTTSQ TSPSSKVQAN GSKRRRQASG  420
GRKSTKTTSQ TSPSSKDAGR VDNLIQQASQ HPLTGHLESE HV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A3e-34361718169TIR-NB-LRR type resistance protein RPV1
5ku7_B3e-34361718169TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14142.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.14e-15WRKY family protein