PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14128.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 368aa    MW: 39598.3 Da    PI: 9.0401
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14128.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.3e-3980140262
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+
  mrna14128.1-v1.0-hybrid  80 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 140
                              67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3564136IPR003851Zinc finger, Dof-type
PfamPF027019.0E-3383138IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.53484138IPR003851Zinc finger, Dof-type
PROSITE patternPS01361086122IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVFSSIPVYL DPPNWHQQPN HPLGSGSTEN HAQLPPLPPA QFGTHVGGGG GTDGSGGSGT  60
GSIRPNSMAD RARLAKIPQP ETALKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR  120
GGALRNVPVG GGCRRNKKSK TSSSSRSKSP ASSTENQQMR ETGSNNPTGL INQLSHPQAQ  180
SLPFLESIQN LSRYGGAGNM GLNSFNEIQQ VQAQSTTDHM GFQIGAGNNM MNLSGGLGMD  240
QWRNLQQIPF LGSTGFESSS TTGLYPFQNT TEGVDQDSQL RSTNSRVTTT HQVPPVKVED  300
HNHGVSLTRP FLGISGNNIN SSNSNINNDN DNNNNSNNNN NNNQFWGGNA WADLSGTLNS  360
SSTSHLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14128.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461229.10.0PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A2P6QIK90.0A0A2P6QIK9_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004294531.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-48DNA binding with one finger 2.4