PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna14066.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 289aa    MW: 32628.2 Da    PI: 4.6301
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna14066.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.21.2e-13261636128
                      NAM   6 rFhPtdeelvveyLkkkvegkk.leleevikevdiyk...vePwdLpk...kvka.eekewyfFskrdkkyatgkrkn...ratks 80 
                               F+P d +lv +yL ++++  +  +  ++++++diy    +ePw +      ++  +++  yfF++ +k +++gk k+   r+ + 
  mrna14066.1-v1.0-hybrid  26 TFNPADTQLVGHYLYNQITLGHgGNGMQAFPDLDIYGesgMEPWAIWDslePIRIpHQDFSYFFARVKKLSSNGKGKRlccRVGSG 111
                              5****************987776444478999999953337*****6324433332344569999999988877655411245669 PP

                      NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapk...gektdWvmheyrl 128
                              g+W++t   k+v++   +++ g  + L + ++++ +    ++  W+m+ey++
  mrna14066.1-v1.0-hybrid 112 GTWSETEPGKDVFVDgVQQAYGKLRKLRYENKDETSvgyQHHGAWLMEEYTI 163
                              9************9844555788899999854333311135889******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.68321179IPR003441NAC domain
SuperFamilySSF1019419.42E-1421173IPR003441NAC domain
PfamPF023651.5E-1026163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MASSSSCCGS SGLVRLEELQ WGVVKTFNPA DTQLVGHYLY NQITLGHGGN GMQAFPDLDI  60
YGESGMEPWA IWDSLEPIRI PHQDFSYFFA RVKKLSSNGK GKRLCCRVGS GGTWSETEPG  120
KDVFVDGVQQ AYGKLRKLRY ENKDETSVGY QHHGAWLMEE YTINHLPDLA LYRLEVNDKG  180
GGARNKRKTI SDENPTSFKK QKLELKRDQQ PSQCDDHDYS VDQNLVLSPT GFGLDDDDDQ  240
FMANLDQWNE ELQQIITTVP QQQVVEPNSS NCEELQQQGE QQLLPSWW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna14066.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024199426.11e-75uncharacterized protein LOC112202658
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2193324
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.16e-06NAC domain containing protein 20