PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13990.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 28937.3 Da PI: 10.2508 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.8 | 1.1e-14 | 35 | 113 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 l + a+++ ++l+d++g +W vkl ++++g+++l+kGW +F++ L+eg f+ F+++ s+f +v++f+k mrna13990.1-v1.0-hybrid 35 LEIKGFVASKYRDF--LANSVILKDPNGAKWPVKL--TRSDGSTWLEKGWLKFAHFYSLEEGYFLFFSYECVdSCF--HVRIFSK 113 55555555566322..33469**************..*********************************888999..*****98 PP | |||||||
2 | B3 | 48.9 | 1.2e-15 | 154 | 252 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 + +++ + k l +p ++a+++ g+ ++ + l+ ++g++W+ k +++k+ gr + +GW++F+k+n+L++gD +v++ mrna13990.1-v1.0-hybrid 154 VIKVQPTYVKYYHLQIPISYAKNFicRGQ---TRNVDLRIPKGKTWSAKSSVTKQAGRseiARIHGGWSKFAKDNQLRVGDDIVLE 236 5556666666667********66676444...557***************997777777789999********************* PP E-SS.SEE..EEEEE- CS B3 84 ldgr.sefelvvkvfr 98 ++++ ++++ v++fr mrna13990.1-v1.0-hybrid 237 MIKQqPKTTFEVHIFR 252 99888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-20 | 14 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-18 | 14 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.26E-17 | 19 | 112 | No hit | No description |
PROSITE profile | PS50863 | 11.321 | 20 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-6 | 21 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-12 | 28 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.8E-18 | 145 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.51E-16 | 146 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-16 | 151 | 252 | No hit | No description |
Pfam | PF02362 | 1.6E-13 | 152 | 253 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.534 | 152 | 253 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0011 | 152 | 253 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MASSKRRKGN SLAIQEKTPG FFKVVLNKAL QDGKLEIKGF VASKYRDFLA NSVILKDPNG 60 AKWPVKLTRS DGSTWLEKGW LKFAHFYSLE EGYFLFFSYE CVDSCFHVRI FSKNYIEINY 120 PFKSSQHEEP NLGGGDGVKF SSADSFKSTF PFCVIKVQPT YVKYYHLQIP ISYAKNFICR 180 GQTRNVDLRI PKGKTWSAKS SVTKQAGRSE IARIHGGWSK FAKDNQLRVG DDIVLEMIKQ 240 QPKTTFEVHI FRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13990.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004295953.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
Refseq | XP_011461290.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
Refseq | XP_011461291.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A2P6QI58 | 2e-77 | A0A2P6QI58_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004295953.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna13990.1-v1.0-hybrid |