PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13970.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 268aa    MW: 29957.6 Da    PI: 8.9844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13970.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-1761106148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  mrna13970.1-v1.0-hybrid  61 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4723555IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.0E-104167IPR009057Homeodomain-like
SuperFamilySSF466898.98E-2241111IPR009057Homeodomain-like
PROSITE profilePS5129427.33456110IPR017930Myb domain
SMARTSM007177.6E-1760108IPR001005SANT/Myb domain
PfamPF002491.1E-1561105IPR001005SANT/Myb domain
CDDcd001678.29E-1363106No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2068107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDRTRGFPTG VLCGLVWRPT LGFHSQSFRF EGGGRQIIGL NRTGKSCRLR WVNYLHPGLK  60
RGKMTPQEER LVLELHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QEKKRAVSPS  120
SSSSNCSSSS NITTNEGGAS FYDTGGVEMV ASSAAKKNIN GGDQEKEDGN DTAAKRDQRE  180
YSLDDIWKDI NLPEVNSIEP VYSGSYGEEA CKFPCPLMAT PPAPLSWDSL FKMDEDHESK  240
NMFLPTTPSD NQFLSCFEYG KASSLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-184211037105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-174211091159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-174211091159MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-182411041128MYB TRANSFORMING PROTEIN
1mse_C4e-184211037105C-Myb DNA-Binding Domain
1msf_C4e-184211037105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13970.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461278.11e-170PREDICTED: transcription factor MYB59
SwissprotQ9LX822e-67MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2P6QIB31e-126A0A2P6QIB3_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004295946.11e-136(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.42e-76myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]