PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13959.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 159aa    MW: 17364.9 Da    PI: 10.309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13959.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00184264123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ C++ Fs+   L  H  +H
  mrna13959.1-v1.0-hybrid 42 FACKTCNREFSSFQALGGHRASH 64
                             78**********99999998887 PP
2zf-C2H212.80.0003689111123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg+ F     L  H+r+H
  mrna13959.1-v1.0-hybrid  89 HECTICGMEFAVGQALGGHMRRH 111
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-840111No hitNo description
PfamPF139122.6E-114266IPR007087Zinc finger, C2H2
SMARTSM003550.474264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6354269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PROSITE profilePS501579.24589116IPR007087Zinc finger, C2H2
PfamPF139121.1E-889113IPR007087Zinc finger, C2H2
SMARTSM003550.189111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKRAREDEQQ TDDLVSCLML LSKLDRNHSS SIRKQPSSGR LFACKTCNRE FSSFQALGGH  60
RASHKKPKPD SGAADLLQQP SSPEKPKKHE CTICGMEFAV GQALGGHMRR HKDVMSSAAE  120
RIRAAAVPVL KKSNSSKRVS CLNLDLNLAP PGYHLISN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13959.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294603.11e-114PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A2P6QIB49e-97A0A2P6QIB4_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004294603.11e-113(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-40C2H2 family protein