PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13904.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 509aa    MW: 55664.9 Da    PI: 4.5469
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13904.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.5e-36391302102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F 
  mrna13904.1-v1.0-hybrid  39 FLSKTYDMVDDPATDPIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFL 115
                              9********************999*****************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+k+ll++i+r+k 
  mrna13904.1-v1.0-hybrid 116 RGQKHLLKSINRRKP 130
                              ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.7E-4033123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-3635128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-6435128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MVGTSTNPDE STAQTSAAGG SDSAPAPTPL LNSNAPPPFL SKTYDMVDDP ATDPIVSWSP  60
TNNSFVVWNP PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGQKH  120
LLKSINRRKP AHGHSLQQPQ QPSHGQNSVA ACVEVGKFGL EEEVEMLKRD KNVLMQELIR  180
LRQQQQSTDN QLQTMVQRLQ GMEQRQQQMM SFLAKAVQSP GFLNQFVQQQ NESNRRITEV  240
NKKRRLRQEG IAENERSDTP DGQIVKYQPP MNEAAKAMLR KIMKTNTSSQ LDSFSNHLEN  300
FLLGEGTSSS SAVESGSSSS HASGATLQEV PPTSGHGPFP AISEIESSLK ATNSGEVMRD  360
PFLDMNVLIG AQEAPAVPIS QEVVPEVSQV QGMANGGVIG IPEGNATPEA GVGLIQDMAP  420
EAGDGFIDSP FDFMSLDVDS IPHDDLDALN LWDLLEQSPV PDEMDSTSAE AIPVGNEVQL  480
TENGCDKTQN MDRLTEQMGN LKSNTKGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-281912810129Heat shock factor protein 1
5d5v_B4e-281912810129Heat shock factor protein 1
5d5v_D4e-281912810129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13904.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300222.10.0PREDICTED: heat shock factor protein HSF8
SwissprotQ401521e-169HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A1B0VB920.0A0A1B0VB92_FRAVE; Heat shock factor A1d
STRINGXP_004300222.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-130heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]