PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13877.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 912aa    MW: 100568 Da    PI: 6.6092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13877.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.5e-18328427198
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F
  mrna13877.1-v1.0-hybrid 328 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTF 412
                              89**************************555567778***************9989999999***9.******************* PP

                              EE-SSSEE..EEEEE- CS
                       B3  83 kldgrsefelvvkvfr 98 
                              ++++  e++l +++++
  mrna13877.1-v1.0-hybrid 413 SRMD-PEGKLIMGFRK 427
                              *876.77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-29322435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.01E-18325427IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-21326427No hitNo description
PfamPF023622.5E-15328427IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138328429IPR003340B3 DNA binding domain
SMARTSM010191.8E-19328429IPR003340B3 DNA binding domain
PROSITE profilePS5105014.065592642IPR011124Zinc finger, CW-type
PfamPF074962.0E-10597639IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MDPSACMNAY CGSSSSIEWK KGWALRSGRF ANLCHKCGGL LEVLSPWSVD SLLFQRCALF  60
LTAAWYLWPR LHCGCIASRS LLDFLDGGGV KCTHCTKNSE PHPIASDEKP DGPGTSKISE  120
LKSTPSDNHL DRSNVDNVKL IQLENDKECN GLRNLLQSQN NETVGLLQKM KQDDVPAPVV  180
EIGGTGLSIF NQTSNVSSEG CKPVIYRGNL GINDMYESLP HTNLSMSLGA PSGYANPFPG  240
IVVDEHTRTS SLFLQGARSR HLLPKPPKLA LATGLEENST MASQSRVARP PAEGRGRNQL  300
LPRYWPRITD QELQQISGDP NSTIVPLFEK MLSASDAGRI GRLVLPKACA EAYFPPISQP  360
EGLPLRIQDV KGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK  420
LIMGFRKASN SASMQDTHLS AIHNGAHSSQ TFFSGVIENL PVISGYSGLL QSTKGMDPHL  480
SALSKQLTTA HGDLSWHKSE NPESRAREGL LLQSLVVPER KRTRNIGSKS KRLLIDSQDV  540
LEVKLTWEEA QDLLRPPPAV NPSTVMIEDL EFEEYEEPPV FGKRSIFIVR STGEHEQWAQ  600
CDGCSKWRRL PVDVLLPSKW MCTDNVWDQN RCSCSAPDEL TPKELESFLR LSKEFKKRRM  660
ATNHNPTQEH ESSGLDALAN AAILGDNVAD PGTASVATTT KHPRHRPGCS CIVCIQPPSG  720
KGKHKPSCTC NVCMTVKRRF KTLMINKKKR QSEREAEIAG RNQLAWGPRD DAEVDSTSRH  780
LSSHLDPSDN EAKSPNELES KSQLKMAESG KGKLDLNCHP GREVDLPAEP SQLSMMSLLQ  840
VATLPLDSYL KQTGLTSLVT EQQTSSSPPV PPQATEENEE QLNGDQCLVS IVQDQESGGE  900
ERQDQSQEDP L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-703064352131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13877.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302530.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2P6R8G30.0A0A2P6R8G3_ROSCH; Putative chromatin regulator PHD family
STRINGXP_004302530.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]