PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13862.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Nin-like | ||||||||
Protein Properties | Length: 150aa MW: 17106.9 Da PI: 10.4711 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 76.9 | 2.3e-24 | 38 | 88 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +sle++s+yF++p+++AA e++v++T+LK++CR++ IkRWP Rk++sl mrna13862.1-v1.0-hybrid 38 AKMLSLETISQYFYMPMAQAAEEMNVSVTTLKKRCRELRIKRWPNRKLNSL 88 5889*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.449 | 28 | 108 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.9E-22 | 41 | 88 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MVTVLGLMEK RVCRPTLSIP LLAILNRSGA SSSSKSRAKM LSLETISQYF YMPMAQAAEE 60 MNVSVTTLKK RCRELRIKRW PNRKLNSLKN LEKSIQDSGK NEEELELLEK ERKLVEEVPD 120 LQLEEKTKRL RQAYLYKAQS SSRSKTASA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13862.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305085.1 | 1e-102 | PREDICTED: protein RKD1-like | ||||
Swissprot | Q9M9U9 | 3e-31 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A2P6R8I0 | 2e-37 | A0A2P6R8I0_ROSCH; Putative transcription factor Nin-like family | ||||
STRING | XP_004305085.1 | 1e-102 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34080 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 8e-23 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | mrna13862.1-v1.0-hybrid |