PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13716.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 890aa    MW: 96685.3 Da    PI: 6.3444
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13716.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.45.8e-22308370163
                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L+ eN +L++e+++++ e+++l se+
  mrna13716.1-v1.0-hybrid 308 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKDENATLRSEVNRIRSEYEQLLSEN 370
                              89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.5E-291101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-50140272No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-17301367No hitNo description
PfamPF001701.9E-20308370IPR004827Basic-leucine zipper domain
SMARTSM003384.6E-22308372IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.242310373IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-11311367No hitNo description
CDDcd147021.10E-22313363No hitNo description
PROSITE patternPS000360315330IPR004827Basic-leucine zipper domain
PfamPF055422.6E-23620747IPR008479Protein of unknown function DUF760
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MGSSEMDKPA KEKEKESKTT PPSTQEQQSA TTSAGTVNPD WSGFQAYSPM PPHGFMASSP  60
QAHPHPYMWG VQHIMPPYGT PPHPYVAMYP HGGLYAHPSM PPGSYPFSPF AMPSPNGIVE  120
ASGNTPGSIE ADGKPSEGKE KLPIKRSKGS LGSLNMITGK NNELAKTSGA SANGVYSKSA  180
ESGSEGTSEG SDANSQSDSQ LKSGGRGDSL EGDASQNGGS AHNSQNGTPN SHTVLNPAMG  240
MVPITAAGAP GAVTGPATNL NIGMDYWGAP SSAMPAIRGK VPATPVAGGL VTPGSRDGAQ  300
SQLWLQDERE LKRQRRKQSN RESARRSRLR KQAECDELAQ RAEVLKDENA TLRSEVNRIR  360
SEYEQLLSEN ASLKERLGEI PGHEDLRSGR SDQHLSNDTN QTAQTELHGE KNVCLRPWTK  420
RLGNEYDVEE AQRLLLLGLA CSHPIAHERP NSQTIVQVIS GSIPAPQVSL PEPARPENRQ  480
HCQSELVSGV IGDVSLVIPS GGGLRSPEFR HFHTHTYPHS LSDSKSSISG GFFRSCLPKV  540
GNGLYKCRAR GLIVRASEDS SANLVPVAPL QFESPAGQLL GQILQTHPHL LPAAVDQQLE  600
KLQTERDAQE EESPASKGPL YKRIAEVKEK ERRAALQEII YCLIVQKFVE NEISMIPKIS  660
ATSDPTGRVD FWPNQEQKLE SVHSSEAFEM IQSHLSLVLG ERLVGVGPLS SLVEISKIKL  720
GKLYAASIMY GYFLKRVDQR FQLERTMNIL PKRVTQDPDP APANQLWDPD SLFRIPPDGG  780
DEAGFIDKEE SKSYRLRSYV MYLDAETLQR YATIRSKEAI SLIESQTQAL FGKPDIRIAG  840
DGSIDTSNDE VISLTFSGLT MLVLEAVAFG SFLWDAETDV ESKYNFVKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324330RRSRLRK
2324331RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13716.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9G8F50.0A0A2N9G8F5_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-148basic region/leucine zipper transcription factor 16