PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13644.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 792aa    MW: 85977.2 Da    PI: 6.4171
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13644.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.81.9e-1274197782374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               +lLl+cAeavs+++ e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+s+++ ++s++ ++a+++f+ +
  mrna13644.1-v1.0-hybrid 419 LTLLLQCAEAVSADNYEEATKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPVSAAPVTHSQKLVSAFQVFNGI 504
                              579*********************************************************************************** PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                              sP++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg
  mrna13644.1-v1.0-hybrid 505 SPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SVEALEATGKRLTDFADKLG 586
                              **************************************************************....9******************* PP

                     GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                              +pfef + va+++ +l++++L+++++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+e
  mrna13644.1-v1.0-hybrid 587 LPFEFFP-VAEKVGSLDPDRLNISKREAVAVHWLQ--HSLYDVTGSDAN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVE 664
                              *******.7*************************9..999999999999....**********************.899******* PP

                     GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                              a++yysalfdsl a++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+++++GF+ ++l  +aa+qa lll +++
  mrna13644.1-v1.0-hybrid 665 AIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FHNWREKFQQSGFRGISLAGNAATQATLLLGMFP 749
                              *********************************************888776.********************************** PP

                     GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              sdgy++ e++g+l lgWkd  L+++SaWr
  mrna13644.1-v1.0-hybrid 750 SDGYTLVEDNGTLKLGWKDLCLLTASAWR 778
                              ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.387392758IPR005202Transcription factor GRAS
PfamPF035146.5E-125419778IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MAACALLGDN GDHVSGNGSN NNNNSSASHS PLNSTSQGSS VVEQQQQNPA RSKMVRKRMA  60
SELEVQPNSI RSSNNNNNGD NYMRVSRNRS VMLNPNPTHD KVSNYSTTML NLPVPSSSLM  120
TSGGGGGVLS TASASSSSPA WGPIDPLSLH QHPIHHTQIA ATAPLPAVCG FSGLPLFPPE  180
RTAPSNQPSS TLTTVVMDHQ DSSATAWIDG IIKDLINSST SVSIPQLIQN VREIIFPCNP  240
NLASLLEYRL RSISEPPPPP IPAFNNRRRD QGPGLKLNID STSINDVTTV FPTDSGSHHV  300
MNNQELYLNW GAATTLPQQH QPQQHQQPNP TSSPTCNESN LQPQQHHIIS QAVQPQLQQP  360
QPLDKQPQQN SPSPAAESPQ AAPPSATPAP ATQSPAALLR EKKEEMRQQQ RDEEGLHLLT  420
LLLQCAEAVS ADNYEEATKM LLEISELSTP FGTSAQRVAA YFSEAMSARL VSSCLGIYAS  480
LPVSAAPVTH SQKLVSAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IVDLDIMQGL  540
QWPGLFHILA SRPGGPPYVR LTGLGTSVEA LEATGKRLTD FADKLGLPFE FFPVAEKVGS  600
LDPDRLNISK REAVAVHWLQ HSLYDVTGSD ANTLWLLQRL APKVVTVVEQ DLSHAGSFLG  660
RFVEAIHYYS ALFDSLGASY GEESEERHVV EQQLLSREIR NVLAVGGPSR SGEVKFHNWR  720
EKFQQSGFRG ISLAGNAATQ ATLLLGMFPS DGYTLVEDNG TLKLGWKDLC LLTASAWRPP  780
YHATTNPNLH Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04027793380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13644.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305056.10.0PREDICTED: protein SCARECROW
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA0A2P6R8290.0A0A2P6R829_ROSCH; Putative transcription factor GRAS family
STRINGXP_004305056.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein