PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13561.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 618aa    MW: 68781.6 Da    PI: 4.5556
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13561.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.39.4e-111431852059
                              S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY  20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                +sY+rC+++   gC+++k+v++ ++d +++ +tY g+H+++
  mrna13561.1-v1.0-hybrid 143 WRKSYFRCSHKhdqGCSATKQVQKLDDDSQLFRTTYYGNHTCT 185
                              568*******99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.79E-13134185IPR003657WRKY domain
SMARTSM007748.3E-18137186IPR003657WRKY domain
PfamPF031066.6E-11140184IPR003657WRKY domain
PROSITE profilePS5081110.9140182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-10141185IPR003657WRKY domain
Gene3DG3DSA:2.30.30.2402.0E-6394462No hitNo description
SuperFamilySSF503461.29E-5394462IPR011033PRC-barrel-like
SuperFamilySSF503463.53E-5453520IPR011033PRC-barrel-like
Gene3DG3DSA:2.30.30.2401.3E-9472545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MECSALAESV SLWNRQRVEE ELVLGLELAS QLRRVLSNGD WRSAEGLVTK ILCSFKNSLY  60
FLNGSNHGSE EELSSHIRAN DIALASALPP QILESSSSDA HKAVKRGAAF MDHRGSFKRR  120
KKMTSSQAWS RDGPDFNDDG HAWRKSYFRC SHKHDQGCSA TKQVQKLDDD SQLFRTTYYG  180
NHTCTNNSFL KAPEFVLDAT STTPTEVSDS KFTIIYDNSS SSVTNNQEQP WFSSTQNELI  240
IKSSHTTGNQ SSLLSSSGYL VSPDTVVFEP SEPISGGIPE IELDLEDMLL GAEIGHLFEE  300
LLPYELCRRA SQSPPEASGF QTQLGFKEES EDLFDLESKP RDEKPNGIGP SKEANATLLG  360
SDFQEPKSGE GEDMKEDGLK RIDENVGLKK VRQLMKRSSI LAKQVISIES ALSLGFVSQL  420
WVNTTSWMVM FVEVRRNLLS GECERFPLED VFQVGDVVLV EDESVIQNDF KMVGLETLVG  480
YEVVTPGRRT IGRVRGYSFN INSGAVESLE LDSFGIALIP SSLVSTYALF VEDVLEVVSD  540
AVIVHEAAAS RIYRLTKGFL DNQNAATSID DIEEYAEFER PVESDKRTRR STGNQKFQSG  600
KSKTDDDWEP ELPMDYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13561.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302565.10.0PREDICTED: uncharacterized protein LOC101314001
TrEMBLA0A2P6R8E70.0A0A2P6R8E7_ROSCH; Uncharacterized protein
STRINGXP_004302565.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-16WRKY DNA-binding protein 70