PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13554.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 298aa    MW: 33543.7 Da    PI: 7.6056
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13554.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.49.2e-26129189259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              dDg++WrKYGqK++ ++++prsY+rC+++   gC+++k+v++ ++dp+++ +tY g+H+++
  mrna13554.1-v1.0-hybrid 129 DDGHAWRKYGQKQILNARHPRSYFRCSHKyeqGCKATKQVQKVEDDPSLFRTTYFGNHTCN 189
                              8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-26115189IPR003657WRKY domain
PROSITE profilePS5081120.897123186IPR003657WRKY domain
SuperFamilySSF1182901.05E-24124190IPR003657WRKY domain
SMARTSM007749.6E-38128190IPR003657WRKY domain
PfamPF031063.1E-25129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MECTWPASRK LQEKVKEELL RGHELANQLR LVVGNGDGGL LAKGFVKKIG CSFTSCLSLL  60
TGNHESKGEY IQVSTGRSTF ALPTIVESSS SWDALKTIKS RETFTDSGSS SKKRKTSHSW  120
SRDAPDFIDD GHAWRKYGQK QILNARHPRS YFRCSHKYEQ GCKATKQVQK VEDDPSLFRT  180
TYFGNHTCNH SLLKSPELIL DNVIGGSPIE ESNSMFTITF ENNNLPYELE HPFFSSNTSI  240
EREIIKSNHV VSSHSSSLSF DYLVQRDQPM LFESSEPASS RLPAMMEYFA QEILPML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-26128188868OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13554.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305075.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A2P6R8D51e-148A0A2P6R8D5_ROSCH; Putative transcription factor WRKY family
STRINGXP_004305075.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-34WRKY DNA-binding protein 70