PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna13552.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 301aa MW: 33880.4 Da PI: 4.6943

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna13552.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	37.4	5e-12	124	171	14	58
--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 14 evkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 + +gs r+Y+rCt++ gC++ k+v+r +++p+++ +tY ++H++ mrna13552.1-v1.0-hybrid 124 DRRGSYKRRNYFRCTHKfdqGCKAIKHVQRIKDEPRLFRTTYYDNHTC 171 56899999******9999************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-10	123	171	IPR003657	WRKY domain
PROSITE profile	PS50811	11.979	123	169	IPR003657	WRKY domain
SMART	SM00774	3.6E-10	123	173	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-11	124	171	IPR003657	WRKY domain
Pfam	PF03106	3.3E-11	125	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEWTWLESVS SNRQTTMEEL VQGREMANQL RGVLSSDVRS AEGLVMKILG SLTDTLLILN 60 GSQVDAKEEL ISQVQANSST SSVTASGSAT AGPDSSSWDF VPEDAMKSKD SNEESCKSTE 120 TFKDRRGSYK RRNYFRCTHK FDQGCKAIKH VQRIKDEPRL FRTTYYDNHT CIDYLRAPEL 180 ILDCSSREDS SQKIIRFDTT DNTLTFKQEH PFFSAFTSIK NEGVKEEEMI KPISDHDHVT 240 YHNQSPSSSA YLMPPGLGVF ESSGGTSNGF SSTIAYDHDD VISSMMVEYF DNEVDFPYEF 300 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna13552.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305077.1	0.0	PREDICTED: probable WRKY transcription factor 70
TrEMBL	A0A1S5SL99	1e-179	A0A1S5SL99_FRAVE; WRKY transcription factor 41
STRING	XP_004305077.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1995	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	5e-16	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	mrna13552.1-v1.0-hybrid