PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13549.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 232aa    MW: 25955.2 Da    PI: 9.798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13549.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.57.4e-25129189259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              dDg++WrKYGqK++ ++ +prsY+rC+++   gC+++k+v++ ++dp+++ +tY g+H+++
  mrna13549.1-v1.0-hybrid 129 DDGHAWRKYGQKQILNAWHPRSYFRCSHKyeqGCKATKQVQKVEDDPSLFRTTYFGNHTCK 189
                              8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-25119189IPR003657WRKY domain
PROSITE profilePS5081120.805123186IPR003657WRKY domain
SuperFamilySSF1182904.97E-24125189IPR003657WRKY domain
SMARTSM007742.2E-35128190IPR003657WRKY domain
PfamPF031061.4E-24129189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MECTWPASRK LQEKVKEELL RGHELANQLR SVVGNSDGGL LAKGFVKKIV FSFTTSLSLL  60
TGNHESKGEH IQVSTGSSTF ALPTIVESSS SWDALKTIKS RETFTDSSSS SKKRKISHSW  120
SRDAPDFNDD GHAWRKYGQK QILNAWHPRS YFRCSHKYEQ GCKATKQVQK VEDDPSLFRT  180
TYFGNHTCKH SLLKSPELIL DNIIGGSPIE ESNSTFMITF ENRGGSKPRV I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-26129189969OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13549.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305078.11e-172PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A2P6R8D51e-118A0A2P6R8D5_ROSCH; Putative transcription factor WRKY family
STRINGXP_004305078.11e-171(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-31WRKY DNA-binding protein 70