PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13547.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 345aa MW: 38756.8 Da PI: 5.4231 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.5 | 1.8e-25 | 147 | 208 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK++ ++++pr+Y+rCt++ gC+++k+v+r +++p+++ +tY g+H+++ mrna13547.1-v1.0-hybrid 147 VDDGHAWRKYGQKTILNTTHPRNYFRCTHKfdqGCKATKHVQRIKDEPQLFRTTYIGNHTCT 208 59***************************9999**************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-26 | 132 | 208 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-25 | 140 | 208 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.941 | 142 | 205 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-37 | 147 | 209 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 148 | 207 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MEWTWPKSVS SNRQRVMEEL VQGREMANQL RGVLSGDVRS AEGLVTKILG SLTNTLLILS 60 GSQEPKEELI YSQIQANSSN ISAVTASGSA TAGPDSSSWD LVHDDAMKSE DSNEESCKST 120 ETFKDRRGSY KRRKTLHSWT KDTLDLVDDG HAWRKYGQKT ILNTTHPRNY FRCTHKFDQG 180 CKATKHVQRI KDEPQLFRTT YIGNHTCTGS LRDPELILDC SSRQETSQNM IRFDSTDNAL 240 SCKQEHPFFS AFTSIKKESV KEEEMIKPIS DHDHMTNHNR SSSSSDYLMS SGLGVFESSG 300 DLNSEFSGDL NSEFSSTAVY DHDDVISRIM GGCFDIEVDF SYEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-23 | 147 | 207 | 8 | 68 | OsWRKY45 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13547.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302592.1 | 0.0 | PREDICTED: probable WRKY transcription factor 70 | ||||
TrEMBL | A0A1S5SL99 | 0.0 | A0A1S5SL99_FRAVE; WRKY transcription factor 41 | ||||
STRING | XP_004302592.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1995 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 8e-38 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | mrna13547.1-v1.0-hybrid |