PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13547.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 345aa    MW: 38756.8 Da    PI: 5.4231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13547.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.51.8e-25147208159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +dDg++WrKYGqK++ ++++pr+Y+rCt++   gC+++k+v+r +++p+++ +tY g+H+++
  mrna13547.1-v1.0-hybrid 147 VDDGHAWRKYGQKTILNTTHPRNYFRCTHKfdqGCKATKHVQRIKDEPQLFRTTYIGNHTCT 208
                              59***************************9999**************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26132208IPR003657WRKY domain
SuperFamilySSF1182906.54E-25140208IPR003657WRKY domain
PROSITE profilePS5081121.941142205IPR003657WRKY domain
SMARTSM007742.1E-37147209IPR003657WRKY domain
PfamPF031061.4E-24148207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEWTWPKSVS SNRQRVMEEL VQGREMANQL RGVLSGDVRS AEGLVTKILG SLTNTLLILS  60
GSQEPKEELI YSQIQANSSN ISAVTASGSA TAGPDSSSWD LVHDDAMKSE DSNEESCKST  120
ETFKDRRGSY KRRKTLHSWT KDTLDLVDDG HAWRKYGQKT ILNTTHPRNY FRCTHKFDQG  180
CKATKHVQRI KDEPQLFRTT YIGNHTCTGS LRDPELILDC SSRQETSQNM IRFDSTDNAL  240
SCKQEHPFFS AFTSIKKESV KEEEMIKPIS DHDHMTNHNR SSSSSDYLMS SGLGVFESSG  300
DLNSEFSGDL NSEFSSTAVY DHDDVISRIM GGCFDIEVDF SYEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-23147207868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13547.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302592.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S5SL990.0A0A1S5SL99_FRAVE; WRKY transcription factor 41
STRINGXP_004302592.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-38WRKY DNA-binding protein 70