PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13546.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 448aa    MW: 49488.1 Da    PI: 6.3482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13546.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.58.4e-26135196159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +dDg++WrKYGqK+++++++pr+Y+rCt++   gC+++k+v+r +++p+++ +tY g+H++ 
  mrna13546.1-v1.0-hybrid 135 VDDGHAWRKYGQKMIQNNKHPRNYFRCTHKfdqGCKATKHVQRIKDEPQLFRTTYYGNHTCA 196
                              59***************************9999**************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-27120196IPR003657WRKY domain
SuperFamilySSF1182905.75E-25128196IPR003657WRKY domain
PROSITE profilePS5081122.86130193IPR003657WRKY domain
SMARTSM007742.3E-38135197IPR003657WRKY domain
PfamPF031068.0E-25136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEELVQGREM ANQLRGVLRS DVRSAEGLVT KILGSLTNTL LILNGSQVDA KEELISQVHA  60
NSNTGAVTAS ASGSGSATAG LVSSSWDVVH DDAMMKSEDS NEESCKSTET FKDRRGSYKR  120
KKTSHSWTKD TLDLVDDGHA WRKYGQKMIQ NNKHPRNYFR CTHKFDQGCK ATKHVQRIKD  180
EPQLFRTTYY GNHTCADYLR APELILDCSS REDSSQKMIR FNSTDNDEHP FFSAFTSTKN  240
EGVKEEEMIK PFKPISDHDH VTYHNQSPSS SAYIMSPGPC VLESSGGTLN GFSSTIANDH  300
DDVISSMMIE YFDNEIDFPY DCEFFGEAME SPKFSPSPAE TIANHDNLLT QILHLEPKSL  360
LRCSPSFPAP NSATATPSKI LPFLSLPSSS SPPLRIPLLS PPFAPGAPTS QNTPEKGRRS  420
FAEEFVTAAV NKKKTRVAQP SADRIDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-24135195868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13546.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305079.10.0PREDICTED: probable WRKY transcription factor 70 isoform X1
TrEMBLA0A1S5SL990.0A0A1S5SL99_FRAVE; WRKY transcription factor 41
STRINGXP_004305079.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-33WRKY DNA-binding protein 70