PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13517.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 331aa    MW: 36795.2 Da    PI: 9.2126
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13517.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.83.9e-2375119145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCs+++ +++k+CErH++rgr rsrk +e+
  mrna13517.1-v1.0-hybrid  75 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRGRYRSRKLVES 119
                              79***************************************9986 PP
2QLQ51.62.9e-181448236
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                              FT +Q++++++Q++++KyL a++PvPpeLl++i+
  mrna13517.1-v1.0-hybrid 14 LFTVSQWAEMEHQAMVFKYLKAGLPVPPELLAPIR 48
                             69********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.6E-101349IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.8881449IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.0E-131548IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.4275119IPR014977WRC domain
PfamPF088797.4E-2076118IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSRSLVGGGG HAPLFTVSQW AEMEHQAMVF KYLKAGLPVP PELLAPIRSS FNLMYPDFLR  60
HPSLTYASFC GKKIDPEPGR CRRTDGKKWR CSKDAHPDSK YCERHMNRGR YRSRKLVESQ  120
TASQTLSTVA SSEIRTGSHS HSGSFQNMPL HSAGNSGSLC FGSDVSQLKM EPIPYGIVKR  180
GNRVLDGAEE HNFMSEASGS ARSVGVDSTV DSPWRLMTSR VPSNSSSEPR DGCFLLNNNS  240
QLQTLQDSEA LTVDAAMTKQ QQRQYVGGEF GVLRSVKQEQ HSLQPFFDEW PKSRDLGFHH  300
NDPRSTNNVS NTTQLSMSNL MAPSNFFKER *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13517.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465053.10.0PREDICTED: growth-regulating factor 5-like
TrEMBLA0A2P6PAZ90.0A0A2P6PAZ9_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_008238100.11e-168(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.18e-41growth-regulating factor 2