PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13487.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 353aa MW: 39270.5 Da PI: 8.4565 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103 | 1.8e-32 | 70 | 123 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ mrna13487.1-v1.0-hybrid 70 PRLRWTPDLHLRFVHAVERLGGQDRATPKMVLQLMNIKGLSIAHVKSHLQMYRS 123 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-30 | 66 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.728 | 66 | 126 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-15 | 68 | 124 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-23 | 70 | 125 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-8 | 71 | 122 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDGMSGESEC SKTSPSDDRN EEGSSESGEN YDGEINKPKN NGGSSSNSTV EESGDQKKGS 60 VRPYVRSKMP RLRWTPDLHL RFVHAVERLG GQDRATPKMV LQLMNIKGLS IAHVKSHLQM 120 YRSKKIDDAG QVIGDQGHHL VECGDKNIYN LSQLPMLQGY NRSHMSTSFR YGYGDSNSWS 180 TSAYENLRHP RSTSGIFQGT IAEKLFGSST SNWNSTAYSN FRTSSEQGPS WITHTLKDEC 240 SQLYNIRRQS LQAHQARLSI IDHLNPTMHV QPKAKDHFTS LSSTATNLQD LKTLKRKASD 300 CDLDLDLSLR LTTKNNDESP RSTTLKDNEV DCTSLSLSLY SPASAKLSRV KE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-17 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-17 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-17 | 71 | 125 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 71 | 125 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 71 | 125 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 71 | 125 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-17 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-17 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-17 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-17 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-17 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-17 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13487.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302585.1 | 0.0 | PREDICTED: probable transcription factor KAN2 | ||||
TrEMBL | A0A2P6R8W9 | 0.0 | A0A2P6R8W9_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004302585.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 9e-59 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna13487.1-v1.0-hybrid |