PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13480.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 200aa MW: 22489.2 Da PI: 8.0882 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.4e-09 | 64 | 104 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P + K++ +++Le+A++Y+k L mrna13480.1-v1.0-hybrid 64 ARERRHRISERFKILQSLVPGgN------KMDTVSMLEEAIQYVKFL 104 699*****************955......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.478 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.95E-15 | 60 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.60E-13 | 61 | 109 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 61 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-13 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-7 | 64 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEYYFPAISD GSNFSSSSVI TNTNNMNING GGYKDRMKKG ASDHDQKVKS SKVKLSTDPQ 60 SVAARERRHR ISERFKILQS LVPGGNKMDT VSMLEEAIQY VKFLKNQIRL HQTMINFARD 120 DACHQYYDHD AATGNVFQLP IHHGHPVNRP QQQALCYEQN NFVGTSSSVQ PSVPVMPDYS 180 CFQGQEAAPE IDAYLKYYS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13480.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468442.1 | 1e-130 | PREDICTED: transcription factor LAX PANICLE-like | ||||
TrEMBL | A0A2P6R8X9 | 1e-91 | A0A2P6R8X9_ROSCH; Putative adenylylsulfatase transcription factor bHLH family | ||||
STRING | XP_008388859.1 | 3e-51 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7167 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 6e-29 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | mrna13480.1-v1.0-hybrid |