PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13368.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 784aa MW: 89032.1 Da PI: 7.6126 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 28.8 | 2.4e-09 | 705 | 726 | 2 | 23 |
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 dDg++WrKYGqKe+ gs++pr+ mrna13368.1-v1.0-hybrid 705 DDGHAWRKYGQKEILGSRHPRK 726 8*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52200 | 3.01E-30 | 6 | 122 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
PROSITE profile | PS50104 | 17.641 | 15 | 165 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Gene3D | G3DSA:3.40.50.10140 | 1.1E-17 | 15 | 116 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 1.6E-30 | 16 | 166 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SMART | SM00255 | 1.3E-26 | 16 | 140 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52058 | 9.52E-25 | 180 | 395 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 3.1E-23 | 184 | 382 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF13855 | 1.0E-6 | 293 | 345 | IPR001611 | Leucine-rich repeat |
PROSITE profile | PS51450 | 7.258 | 313 | 334 | IPR001611 | Leucine-rich repeat |
PROSITE profile | PS51450 | 4.893 | 336 | 358 | IPR001611 | Leucine-rich repeat |
Gene3D | G3DSA:2.20.25.80 | 9.3E-8 | 697 | 726 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-7 | 698 | 726 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.405 | 699 | 762 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-4 | 704 | 757 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-6 | 705 | 728 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
MAASSSSSSS SVGRWNYDVF ISFKADDTRK IFVGHLHKAL HEKAINTFLD SDDPSEVMEA 60 IADSRLSVVV FSKHYASSRW CMKELVRIME CMKTMKQIVV PVFYELDRCD IKSSFEEGFG 120 KHEVEEVRRL KSLLIQAASL SCWDSRNYRD DAKFIEKIVD DISKRLIRAT DAVEGIMLDF 180 LRSKQLQGLV LLNMANCRSL VCLPDNICNL AYLTNLTLSG CSKLYRLPEN LGNLESLTVL 240 EVERSGIKEL PFSIIRVNKL KRLSCDGCKE MMAPLSSWSS PIKGFYTYSG ILHLDLSDCN 300 LFVLSDGIAH LSSLRTLELR RNNLESLPAV MNRLHRLSHL ELEACKRLKS IPELSSSITY 360 IDAHDCTALE TVSTPKPRSS TNLCLTFSNC LQLIHTNLFR DIVETHSHYQ GSYLRPLSFS 420 MSLPGSEIPH WFNHQCKGFS VNVQLPQNWF DDKFLGFALC VVSNFKGAHN DASNLSAICY 480 CTFKGNHGEY KFNFQLLDWG FRTNRFLQSD HMFLGYVPWS QYRCSNEGKP VSERYYTEAT 540 FEIVVENGVY THENNRTVIR RHCITSCGVR LFHGDYMEVQ NLSIAQPNSR HDSCEILLDT 600 ARKRKRDIAG VTLQWEWPPT EEVFTEQEQE GSPPREGSLA GEGPSVGKRS SVGEGVLSIL 660 SSVATVESGA NERDGATIPN NTNRRRRTNL RNSATWIRDT SQLIDDGHAW RKYGQKEILG 720 SRHPRKLLPK SADFVWNYLD LYSYDIHSSI HDHVCRKRSD ERKAGYERGV FATYGYGGLL 780 SDM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ku7_A | 9e-29 | 17 | 166 | 8 | 169 | TIR-NB-LRR type resistance protein RPV1 |
5ku7_B | 9e-29 | 17 | 166 | 8 | 169 | TIR-NB-LRR type resistance protein RPV1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13368.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU024838 | 0.0 | EU024838.1 Fragaria vesca subsp. americana clone fosmid 19M24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011470424.1 | 0.0 | PREDICTED: TMV resistance protein N-like | ||||
Refseq | XP_011470425.1 | 0.0 | PREDICTED: TMV resistance protein N-like | ||||
Refseq | XP_011470426.1 | 0.0 | PREDICTED: TMV resistance protein N-like | ||||
TrEMBL | A0A2P6SMR5 | 0.0 | A0A2P6SMR5_ROSCH; Putative transcription factor WRKY family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26343 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45050.1 | 2e-10 | Disease resistance protein (TIR-NBS-LRR class) |
Link Out ? help Back to Top | |
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Phytozome | mrna13368.1-v1.0-hybrid |