PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13368.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 784aa    MW: 89032.1 Da    PI: 7.6126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13368.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.82.4e-09705726223
                              --SS-EEEEEEE--TT-SS-EE CS
                     WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                              dDg++WrKYGqKe+ gs++pr+
  mrna13368.1-v1.0-hybrid 705 DDGHAWRKYGQKEILGSRHPRK 726
                              8*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522003.01E-306122IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010417.64115165IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101401.1E-1715116IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.6E-3016166IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002551.3E-2616140IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF520589.52E-25180395IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.1E-23184382IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138551.0E-6293345IPR001611Leucine-rich repeat
PROSITE profilePS514507.258313334IPR001611Leucine-rich repeat
PROSITE profilePS514504.893336358IPR001611Leucine-rich repeat
Gene3DG3DSA:2.20.25.809.3E-8697726IPR003657WRKY domain
SuperFamilySSF1182903.01E-7698726IPR003657WRKY domain
PROSITE profilePS5081111.405699762IPR003657WRKY domain
SMARTSM007743.9E-4704757IPR003657WRKY domain
PfamPF031061.2E-6705728IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MAASSSSSSS SVGRWNYDVF ISFKADDTRK IFVGHLHKAL HEKAINTFLD SDDPSEVMEA  60
IADSRLSVVV FSKHYASSRW CMKELVRIME CMKTMKQIVV PVFYELDRCD IKSSFEEGFG  120
KHEVEEVRRL KSLLIQAASL SCWDSRNYRD DAKFIEKIVD DISKRLIRAT DAVEGIMLDF  180
LRSKQLQGLV LLNMANCRSL VCLPDNICNL AYLTNLTLSG CSKLYRLPEN LGNLESLTVL  240
EVERSGIKEL PFSIIRVNKL KRLSCDGCKE MMAPLSSWSS PIKGFYTYSG ILHLDLSDCN  300
LFVLSDGIAH LSSLRTLELR RNNLESLPAV MNRLHRLSHL ELEACKRLKS IPELSSSITY  360
IDAHDCTALE TVSTPKPRSS TNLCLTFSNC LQLIHTNLFR DIVETHSHYQ GSYLRPLSFS  420
MSLPGSEIPH WFNHQCKGFS VNVQLPQNWF DDKFLGFALC VVSNFKGAHN DASNLSAICY  480
CTFKGNHGEY KFNFQLLDWG FRTNRFLQSD HMFLGYVPWS QYRCSNEGKP VSERYYTEAT  540
FEIVVENGVY THENNRTVIR RHCITSCGVR LFHGDYMEVQ NLSIAQPNSR HDSCEILLDT  600
ARKRKRDIAG VTLQWEWPPT EEVFTEQEQE GSPPREGSLA GEGPSVGKRS SVGEGVLSIL  660
SSVATVESGA NERDGATIPN NTNRRRRTNL RNSATWIRDT SQLIDDGHAW RKYGQKEILG  720
SRHPRKLLPK SADFVWNYLD LYSYDIHSSI HDHVCRKRSD ERKAGYERGV FATYGYGGLL  780
SDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A9e-29171668169TIR-NB-LRR type resistance protein RPV1
5ku7_B9e-29171668169TIR-NB-LRR type resistance protein RPV1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13368.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0248380.0EU024838.1 Fragaria vesca subsp. americana clone fosmid 19M24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470424.10.0PREDICTED: TMV resistance protein N-like
RefseqXP_011470425.10.0PREDICTED: TMV resistance protein N-like
RefseqXP_011470426.10.0PREDICTED: TMV resistance protein N-like
TrEMBLA0A2P6SMR50.0A0A2P6SMR5_ROSCH; Putative transcription factor WRKY family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2634323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.12e-10Disease resistance protein (TIR-NBS-LRR class)