PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13365.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26250.9 Da PI: 9.7986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.1 | 3.8e-14 | 80 | 128 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h e+Er+RR+++ + ++ Lr+llP + ++K s ++ +Av+YIk+Lq mrna13365.1-v1.0-hybrid 80 HRENERQRRQDMATLYSSLRSLLPLEF--VKGKRSTSDHMNEAVNYIKHLQ 128 99***********************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.23E-13 | 72 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-11 | 73 | 132 | No hit | No description |
PROSITE profile | PS50888 | 13.802 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 80 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-11 | 80 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-7 | 81 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MFPLHQGNKL VFQISASNPH HQNSSEDRIL GYASPDGCSS TVLSNNSSMA GKRRRRKSVV 60 AGLDQTVIEN SKDNKKMMIH RENERQRRQD MATLYSSLRS LLPLEFVKGK RSTSDHMNEA 120 VNYIKHLQNR IKTIDAKRDE LKKFPKTSTV IDRRCTTGSS LNSDMVNLSS CFTVQPSCGG 180 VQILVSSGFR EEGSPLISIS SVLEMLLEQG LTVVSCLSSQ VNERLLHSIQ IEVLN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | KRRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13365.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308135.1 | 1e-172 | PREDICTED: transcription factor bHLH36-like | ||||
Swissprot | Q9FLI1 | 2e-36 | BH036_ARATH; Transcription factor bHLH36 | ||||
TrEMBL | A0A2P6SMP7 | 1e-146 | A0A2P6SMP7_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004308135.1 | 1e-171 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 1e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna13365.1-v1.0-hybrid |