PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13364.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 792aa    MW: 88517.8 Da    PI: 8.5846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13364.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-121769155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                             ++++h   Er+RR+++ + ++ Lr+ lP+ +    ++K s a+   +Av+YIk Lq
  mrna13364.1-v1.0-hybrid 17 KKMMHRDTERKRRQEMATLYASLRSTLPPqS---MKGKRSLADHMNEAVNYIKLLQ 69
                             6899*************************55...*******************998 PP
2HLH22.71.8e-07243293355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +   +Er+RR+ +  + + Lr+llP  +    ++K s +e   +Av+YIk+L+
  mrna13364.1-v1.0-hybrid 243 IMRRDNERQRRQLMAIRTASLRSLLPLeS---IKGKRSLSEHINEAVNYIKQLK 293
                              566789*********************66...********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-131585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-81673No hitNo description
PROSITE profilePS5088813.7831668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-91769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-91885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0422274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.665240292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-7240297No hitNo description
SuperFamilySSF474592.49E-10240314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-4245292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-7245312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.059246298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF561124.85E-69462741IPR011009Protein kinase-like domain
Gene3DG3DSA:2.60.120.2001.0E-4468492IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF000691.6E-32480735IPR000719Protein kinase domain
PROSITE profilePS5001126.973480738IPR000719Protein kinase domain
SMARTSM002201.2E-20480738IPR000719Protein kinase domain
PROSITE patternPS001070486508IPR017441Protein kinase, ATP binding site
CDDcd140668.64E-84486740No hitNo description
Gene3DG3DSA:3.30.200.209.9E-20493557No hitNo description
Gene3DG3DSA:1.10.510.107.7E-33571763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MDNDQPCANS IIDNNQKKMM HRDTERKRRQ EMATLYASLR STLPPQSMKG KRSLADHMNE  60
AVNYIKLLQT RIKELGSRRD DLKIQRSSPD LSSTSALGLD GNLSGSTGSS SSLLAGNFST  120
SRAVVNPCLG GVEIVISCVT GVVLSRLLQI LLEQGLTVTN CATTHVNKRL VYTIQSEREF  180
LMSYSVVLSV NLMMKYKSEY QIERTQSLSC RTLTAHKGFS LSNINISEAN VNNKDTDAHE  240
RKIMRRDNER QRRQLMAIRT ASLRSLLPLE SIKGKRSLSE HINEAVNYIK QLKEKIQELN  300
AKREELRRVH QQYYSSSAHD FSPEITGNLG TKSTSNIMVG PTCWGGVEIV VSTSSTNCSE  360
LEGFALSGVL KALLAEGLTI VECASTTVNQ RLFHTIQCEV EDLACQNLPE LQLKLNYLCN  420
SGYNANMKAS KPVPEVRLRR QPPQAPKEEN QPETPRVTKN RDYPWDIYPL KELLHATNNF  480
HHDNKIGEGG FGSVYWGRTS KGVEIAVKRL KTMSPKAEME FAVEVEILGR VRHRNLLGLR  540
GFYAGGDERL IVYDFMPNHS LITHLHGQLA NDCLLDWPRR LSIMIGSADG LSDIKASNVL  600
LDNDFQAKVA DFGFAKLIPE GVSHLTTRVK GTLGYLAPEY AMWGKVSESC DVYSFGILLL  660
EIISGRKPIE KLPGGVKRDI VQWATPYVEK GAYNHIADPR LKGKFDREQV KFTITIAMKC  720
TDNSPENRPT MKQVADWLKG GMGTRKKEIT NVGGMEDDEN EENDGNDTDF EGYGMEVSDN  780
KKDATNAKSQ R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tl8_A4e-624397481325BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_D4e-624397481325BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_G4e-624397481325BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_H4e-624397481325BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13364.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF710033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-35bHLH family protein