PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13356.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 930aa    MW: 102794 Da    PI: 5.6275
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13356.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.2e-27959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk nrqvtfskRr g++KKA+ELSvLCda+va+i+f s gkl++++s
  mrna13356.1-v1.0-hybrid  9 KRIENKANRQVTFSKRRLGLFKKAQELSVLCDAQVALIVFCSCGKLFDFAS 59
                             79**********************************************986 PP
2K-box86.17.2e-29771725100
                    K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                              s+ +++e++ ++l+qe+++Lk ++e+Lq+ qRh+lGedL++L lkeL++Le+qL++ l++ R++K++++l+q+e l++k+ +l+e+
  mrna13356.1-v1.0-hybrid  77 SQDNVAESEKQNLYQEVSRLKVRYESLQSWQRHFLGEDLDKLRLKELEHLEKQLDRTLSQARERKMQMMLDQLEALRRKKSDLEEI 162
                              3445899******************************************************************************* PP

                    K-box  91 nkaLrkklee 100
                              +k+L+++lee
  mrna13356.1-v1.0-hybrid 163 KKQLESELEE 172
                              *****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.501161IPR002100Transcription factor, MADS-box
CDDcd002652.46E-37279No hitNo description
SuperFamilySSF554551.96E-29283IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2283170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.83686176IPR002487Transcription factor, K-box
Gene3DG3DSA:3.40.1190.208.2E-102260586IPR029056Ribokinase-like
PfamPF002949.1E-81264572IPR011611Carbohydrate kinase PfkB
CDDcd011671.22E-131265567No hitNo description
SuperFamilySSF536131.36E-89266580IPR029056Ribokinase-like
PRINTSPR009905.5E-6291310IPR002139Ribokinase/fructokinase
PROSITE patternPS005830296320IPR002173Carbohydrate/puine kinase, PfkB, conserved site
PRINTSPR009905.5E-6446461IPR002139Ribokinase/fructokinase
PRINTSPR009905.5E-6488499IPR002139Ribokinase/fructokinase
PROSITE patternPS005840517530IPR002173Carbohydrate/puine kinase, PfkB, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006014Biological ProcessD-ribose metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004747Molecular Functionribokinase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MGRGKVVMKR IENKANRQVT FSKRRLGLFK KAQELSVLCD AQVALIVFCS CGKLFDFAST  60
NDVNEILNRY HQCCYSSQDN VAESEKQNLY QEVSRLKVRY ESLQSWQRHF LGEDLDKLRL  120
KELEHLEKQL DRTLSQARER KMQMMLDQLE ALRRKKSDLE EIKKQLESEL EESEKHDDNT  180
DEDDEEDEAL ILGRPGGQPT GCGNIGIPEI ILVLYPRAIP EIIHVLSPRA MHVETLCFLC  240
FNSNSIALMA STPNSDPEIK DNKSMVVCFG EMLIDFVPTV AGVSLAEAPA FKKAPGGAPA  300
NVAVGISRLG GSAAFIGKVG DDEFGKMLAD ILKQNNVNTS GVRFDHNART ALAFVTLRAD  360
GEREFLFFRN PSADMLLHES ELEISLLQQA KIFHYGSISL IEEPCRSTHQ AAMNIAKKSG  420
CILSYDPNLR LALWPSAEFA RTEIMSIWDQ ADIIKISEEE ITFLTGGDDP YDDNVVLTKL  480
FHPNLKLLIV TEGSEGCRYY TQNFRGRVAG IKVKAIDTTG AGDAFVGGIL NSIASDSNLF  540
QDEEGLREAL LFANACGAIT VTERGAIPAM PTTEAVLQFL AQNADKKNRC LSDSNSGEES  600
EMASKTNPSL MPEIGPDGLA REASVITYTE KVIEEEQHQL RKYIEENYSK IRDVEREFAS  660
LSMEMKLTAG PKKSALEHLR KKIEIATERI HAAKLKEDQA KKAWEAAAKV VKDEEAIKQK  720
LCDDLNSLVQ ESSNTQFSRL EELKRRLEAL NPTRASASVS LGYLLTLPIE KPLDGNSMGL  780
AQSVTTPDSS QVPGGVADNM PNQGNAGNVP VMNGNNQQAP VEGEGRGKKK SQYHGRGKGL  840
GAVPKGRGPP APGWTGSGFD VDDTRLDALN AWDTKVRGSP ALYCYNHNTD RIAELGRETM  900
TKISQLQWLV TGMVKSVGLQ VVHLFLHMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ey7_A2e-5826158016322Fructokinase
5ey7_B2e-5826158016322Fructokinase
5eyn_A2e-5826158016322Fructokinase
5f0z_A2e-5826158016322Fructokinase
5f11_A2e-5826158016322Fructokinase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13356.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0248631e-145EU024863.1 Fragaria vesca subsp. americana clone fosmid 52I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498KL750.0A0A498KL75_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.16e-36MIKC_MADS family protein