PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13351.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 328aa MW: 34335.7 Da PI: 7.1666 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.9 | 1e-35 | 51 | 121 | 3 | 73 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +++++++++hTkv+gR+RRvR++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ mrna13351.1-v1.0-hybrid 51 KQRSSTKDRHTKVEGRGRRVRMPAACAARVFQLTRELGHKTDGETIRWLLEHAEPAIIAATGTGTVPAIAV 121 57899**********************************************************88888444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.2E-30 | 55 | 133 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.156 | 56 | 110 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEENQRQSLE PMNPTFSGHQ FPAAAKKEEF EEGSLSMGLI PVPASAKPVV KQRSSTKDRH 60 TKVEGRGRRV RMPAACAARV FQLTRELGHK TDGETIRWLL EHAEPAIIAA TGTGTVPAIA 120 VSVGGALKIP TSSLANPNGE VSELPRKKRR LHCNSEFVDV EDLSSISSGL APMATVNYGG 180 IGGGGGGGLV PMWQFGANVP AVPFLMFPNS GWAIPSDSVS GQTMFNLQGR PMSNFPVTAL 240 QSGVEVHSCG DVQATSGSIL SGGGSCSTSL GVSNSNAVTS SDTSATTAAP MSHTQLLRDL 300 SLDTLDKREL QFLGDLCGNS QAQYSRP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 150 | PRKKRRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00064 | PBM | Transfer from AT5G51910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13351.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309238.2 | 0.0 | PREDICTED: transcription factor TCP19 | ||||
Swissprot | Q9LT89 | 2e-65 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A2P6SMS7 | 1e-178 | A0A2P6SMS7_ROSCH; Putative transcription factor TCP family | ||||
STRING | XP_004309238.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 7e-64 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna13351.1-v1.0-hybrid |