PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13339.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 511aa    MW: 54418.3 Da    PI: 7.7632
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13339.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-09117137526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C+++ + G C+yGdrCkF H+
  mrna13339.1-v1.0-hybrid 117 VCNYWVQ-GNCSYGDRCKFLHS 137
                              6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5022450IPR000571Zinc finger, CCCH-type
SMARTSM003560.592549IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408112139IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-8116134IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-7117137IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.24E-34129388IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.108.2E-33135387IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-5143182IPR001680WD40 repeat
PfamPF004006.4E-5146182IPR001680WD40 repeat
PROSITE profilePS5008214.218150191IPR001680WD40 repeat
PROSITE profilePS5029414.714150312IPR017986WD40-repeat-containing domain
PROSITE patternPS006780169183IPR019775WD40 repeat, conserved site
SMARTSM003202.7222259IPR001680WD40 repeat
SMARTSM003200.022266303IPR001680WD40 repeat
PfamPF004000.057271302IPR001680WD40 repeat
PROSITE profilePS5008210.241273312IPR001680WD40 repeat
SMARTSM003209.5307350IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDVEGGGSKR IFNRLGGPAQ PDPNKNQKVC YHWRAGKCNR HPCPYLHREL PSPPSHGLNG  60
TASSKRQHGF AANTDGPSGP RGRGPNNFSG GGSNTWGRSG GGGGGGNRVF VRKMDKVCNY  120
WVQGNCSYGD RCKFLHSWST GDCVSLLTTL EGHQNVVSGI ALPSGSDKLY TGSKDETVRV  180
WDCQSGQCLG VINLGGEVGC MISEGPWIFV GIPNAVKAWN TQANSEMSLS GPVGQVYSMV  240
VGNDLLFAGT QDGSILAWKF NTVTNCFEPA ASLNGHTLAV VSLVVGANRL YSGSMDHSIR  300
IWAATQSGNL EVAYTHDEDH PLLTLCGMHD SEAKPVLLCA CNDNTVRLYD LPSFSERGKI  360
FSKQEIRAIQ VGPGGLFFTG DGTGQVRWNY EIEVGFGSIN IVHSFALCGM DIKKASCWNN  420
SVSLGTVSEM APGYSALSST AGSLMGALSI PLHVPSSLAA TEALALWHGV NYRKQLGVTT  480
VVVKGNALSV LNALHSWLGL EQNWERFGCS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B4e-14130353178391F-box/WD repeat protein 7
2ovq_B4e-14130353178391F-box/WD repeat protein 7
2ovr_B4e-14130353178391F-box/WD repeat protein 7
5v4b_B4e-14130353178391F-box/WD repeat-containing protein 7
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13339.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308123.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2P6SMU80.0A0A2P6SMU8_ROSCH; Putative transcription factor C3H family
STRINGXP_004308123.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-179zinc finger WD40 repeat protein 1