PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13327.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 236aa    MW: 24643.2 Da    PI: 4.6697
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13327.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.6e-1665113255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+G+r  +++g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+ +l+g
  mrna13327.1-v1.0-hybrid  65 LYRGIR--SRSGKWVSEIREPRK---STRIWLGTYAMPEMAAAAYDVAAIALKG 113
                              69***6..678*********843...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-964113IPR001471AP2/ERF domain
CDDcd000181.51E-1464121No hitNo description
Gene3DG3DSA:3.30.730.103.8E-2565122IPR001471AP2/ERF domain
SMARTSM003801.2E-2465127IPR001471AP2/ERF domain
PROSITE profilePS5103219.03265121IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1665122IPR016177DNA-binding domain
PRINTSPR003679.1E-66677IPR001471AP2/ERF domain
PRINTSPR003679.1E-6103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MADPYGNVPK SDEQPSDSNP PFFIQLPPTT STSSSIVNDL QDLSGLRSPT GGGSVSSSPR  60
GRHPLYRGIR SRSGKWVSEI REPRKSTRIW LGTYAMPEMA AAAYDVAAIA LKGPDTALNF  120
PSALITYPIP TSSAASDIRA AAARAAASRA EVIRQGESSS AGGVENVDRS GGGRGRRAAV  180
TSDDGGGSQE FMDEEALLNM PNLLADMAEG MLVSPPRGPA NDSPENSDGE SLWSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13327.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308116.11e-167PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ903e-52ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3Q8T9Y91e-120A0A3Q8T9Y9_FRAAN; Transcription factor ERF16
STRINGXP_004308116.11e-167(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-38ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]