PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13324.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 146aa MW: 16298.5 Da PI: 6.6549 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.2e-39 | 5 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee...redamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lr++C++dC++apyfp+++p++f+nvh+++Ga+nv +lk+l++ + r +a+++l+yeAe r+++PvyG++++i++l mrna13324.1-v1.0-hybrid 5 RCAACKYLRKACPEDCIFAPYFPSNNPQRFENVHRIYGAKNVATMLKELEPLQpylRAQAVETLCYEAESRIQNPVYGCAAIIFHL 90 6************************************************66554559***************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+++ ++ela+l++e mrna13324.1-v1.0-hybrid 91 QQQIHNIESELAKLRAE 107 ************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.443 | 4 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-38 | 5 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MVMGRCAACK YLRKACPEDC IFAPYFPSNN PQRFENVHRI YGAKNVATML KELEPLQPYL 60 RAQAVETLCY EAESRIQNPV YGCAAIIFHL QQQIHNIESE LAKLRAEIAI LSSNGHGQAS 120 EIQLSTDQVH EDQSGSSSKA PNWFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-33 | 6 | 108 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-33 | 6 | 108 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13324.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309226.1 | 1e-106 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 7e-42 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2P6SMZ9 | 2e-77 | A0A2P6SMZ9_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004309226.1 | 1e-105 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-44 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | mrna13324.1-v1.0-hybrid |