PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13301.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 383aa    MW: 42381.5 Da    PI: 5.4041
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13301.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34301202101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d++++++i ws +g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+
  mrna13301.1-v1.0-hybrid  30 FLSKTYQLVDDPAIDDIIAWSGDGSSFVVKNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKIIPDR---------WEFSNDGFR 106
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              kg+k+ll++i+r++
  mrna13301.1-v1.0-hybrid 107 KGQKHLLCDIQRRR 120
                              ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3718114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5826119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.72E-3526119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3130119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-203053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAPLPVEQNG ESTSGESTQQ QQQRGSPTPF LSKTYQLVDD PAIDDIIAWS GDGSSFVVKN  60
PTVFARDLLP KYFKHNNFSS FVRQLNTYGF RKIIPDRWEF SNDGFRKGQK HLLCDIQRRR  120
ITPPVVASPA GVPAKLVNSP ANSGEEQVTT TTTTTASSSS SPRPRIPWQL VEENERLRKE  180
NLRLTKEVAE IKCLCHNVFT MVSSYACANP PEGGELTRLE LAPGKGFSGR ETSPKIFGVE  240
IGAKRAREEG GGGGGEGRWQ RGDVKSEACD HSDTPWLKQC HRANQRWIGN EWPMAAASME  300
ESGKVSSKEK IEETCQGMEA EEAIVVEYES GMRVSKNESC VNDCDVMEWI RNERPTVAAS  360
MEESEKVSSK EKIEEACQGM VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-233011910110Heat shock factor protein 1
5hdn_A2e-233011910110Heat shock factor protein 1
5hdn_B2e-233011910110Heat shock factor protein 1
5hdn_C2e-233011910110Heat shock factor protein 1
5hdn_D2e-233011910110Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13301.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308106.10.0PREDICTED: heat stress transcription factor B-2a
TrEMBLA0A1B0VE620.0A0A1B0VE62_FRAVE; Heat shock factor B2a
STRINGXP_004308106.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-64heat shock transcription factor B2A