PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13281.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 33002.7 Da PI: 7.2106 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.1e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l +++ ++G g+W++++ g+ R +k+c++rw +yl mrna13281.1-v1.0-hybrid 17 KGLWSPEEDQRLRNYIIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E+e +++++ +lG++ W+ Ia++++ gRt++++k++w++yl mrna13281.1-v1.0-hybrid 70 RGIFSKQEEETILNLHCMLGNK-WSQIAQHLP-GRTDNEIKNFWHSYL 115 6789******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.224 | 12 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 12 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-28 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.86E-11 | 20 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.62 | 69 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.5E-14 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.45E-10 | 73 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGCKSSDSPK PKPKHRKGLW SPEEDQRLRN YIIKHGHGCW SSVPINAGLQ RNGKSCRLRW 60 INYLRPGLKR GIFSKQEEET ILNLHCMLGN KWSQIAQHLP GRTDNEIKNF WHSYLKKKVA 120 KADEDQDQME LAQSKSQYTS TSSSDHNLDQ HSPCSEKLTS TQIPSYNESP TLAPQIDNQS 180 QRPSPLPRVL FAEWLSLDHV QGGSIGNNIG IDQHNYNPRA DHGLGQSYTY NNEATFGTSG 240 FHHGPSTRDI MNSEFRYDPQ DLIPGTGFVD FIYEGDLVTD FTLHNDVMYM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 13 | 119 | 3 | 108 | B-MYB |
1h8a_C | 2e-22 | 13 | 119 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13281.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309212.1 | 0.0 | PREDICTED: transcription factor LAF1 | ||||
Swissprot | Q9M0K4 | 6e-60 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A2P6SN13 | 0.0 | A0A2P6SN13_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004309212.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3830 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 6e-61 | myb domain protein 18 |
Link Out ? help Back to Top | |
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Phytozome | mrna13281.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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