PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13277.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 647aa    MW: 72823.8 Da    PI: 5.8906
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13277.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.51.7e-1810461551
                             HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +Rr++++KKA+ELS+LCdaevavi f s+gkl+eys+
  mrna13277.1-v1.0-hybrid 10 RRRATLIKKAKELSILCDAEVAVIAFTSDGKLHEYST 46
                             7**********************************96 PP
2K-box202.9e-0882167993
                    K-box   9 leeakaeslqqel.akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                              +++++ ++++ e+   Lk +   L+  + ++ G+ L+ Ls +eL  Le + +++l+++ +kK+ell++ ++++ k  +++q ++++
  mrna13277.1-v1.0-hybrid  82 VSNEEVQKSSDEVlHALKGQHAALELDKLRREGKALDGLSREELCALEIEQHRALESVLKKKEELLVRLVHKSNKERDRHQAIQER 167
                              5666677777665278*********999****************************************999998887777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.451148IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-8747IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-18961IPR002100Transcription factor, MADS-box
PfamPF003193.7E-141044IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-121025IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-122546IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.60888183IPR002487Transcription factor, K-box
PfamPF103581.8E-12242340IPR019448EEIG1/EHBP1 N-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MQENEVPGRR RRATLIKKAK ELSILCDAEV AVIAFTSDGK LHEYSTNSVE HTLSRYQNYK  60
SGLVRATKME SDAPEECRRE AVSNEEVQKS SDEVLHALKG QHAALELDKL RREGKALDGL  120
SREELCALEI EQHRALESVL KKKEELLVRL VHKSNKERDR HQAIQERTRE IPYLQLFPEN  180
STGFSTSSKA EDTFPLEDQG YLRHPSGINH HALFESKNIA VPKLKKPGLM ISLVPDDVGK  240
PTVKLPKTKA QDGTCTWENP VYESVKLVEE SKSGKLKEKI YHFIVSTGTS KSGYLGEASI  300
DFADFVAETE PLTVTLPLKF ANSGVVLHVT ILRVQEDGDY REIDDSEDPS LSRHSSVDIQ  360
NSNWDTDGSN HLSYTENGAF DRTSNGASSV SPQVKDSMPQ NGKAGTTATK LALDWSSDES  420
SFDSPTRVED KPPTEKVKDV SGDSIEKLRK ENAMLMRQAD TSELELQSLR KQVAKESSQG  480
QNLSRQIISL EEERDALKLE CQQLKSLRGR GEEVHASQKL QPADKDTRVQ LEAMKQELNR  540
EKKVKANLHS QLQTTQDSNS ELVLVVKDLE ELLVKKNKEI ADLSNKLETE KNSKLMGKIS  600
IHKTDVDAQE VESLKQKLRE LLSEMDTYEK EREEQDMHIK RLYLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13277.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470373.10.0PREDICTED: LOW QUALITY PROTEIN: centromere protein F-like
TrEMBLA0A2P6SN480.0A0A2P6SN48_ROSCH; Putative EEIG1/EHBP1 domain-containing protein
STRINGXP_008234252.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-18AGAMOUS-like 15