PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13173.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 431aa    MW: 46344.8 Da    PI: 4.9113
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13173.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30229287259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+edp+++++tY g+H+h+
  mrna13173.1-v1.0-hybrid 229 SDLWAWRKYGQKPIKGSPHPRNYYRCSSSkGCSARKQVERSNEDPNMFVVTYCGDHTHP 287
                              799************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-31216289IPR003657WRKY domain
PROSITE profilePS5081131.605223289IPR003657WRKY domain
SuperFamilySSF1182901.23E-26224289IPR003657WRKY domain
SMARTSM007743.1E-38228288IPR003657WRKY domain
PfamPF031063.3E-26230287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEDDDWDLYA VVRSCKTVTT TKASTTSTTP NPVHYDGSEP SWIWDWVKRE EVVETHIPPA  60
GFSNLESSAV NAFYGLEEFY QPFLPSPTVD DTTTTTATSN YAPAGSIIPN STTSFISNFG  120
GGSTSSGQQQ LQQQQNNFLP ANTKSPHFNP GFTPVSGIGR FPEQHLLKQP KLEKSENPEE  180
VVPMLKPVAF VGPSMPTLQV PAHLIRPRKR KSPVKKMVCH LTAENLSSSD LWAWRKYGQK  240
PIKGSPHPRN YYRCSSSKGC SARKQVERSN EDPNMFVVTY CGDHTHPRPT HRNSLAGSTR  300
TKAAFTTTSK LPESSPPVQL LPAAQGGGDD HDDEQGAANN NSGDGDKASE EAEDEEIEED  360
EEDEEFVVSS EEDIFLGMKQ LGRTGSGGST LGSLAAGASG DGFSTKQSNL GSSWGAGCSS  420
SAEATVSGGC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-20212290380Disease resistance protein RRS1
5w3x_D1e-20212290380Disease resistance protein RRS1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13173.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308041.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A2P6SNG90.0A0A2P6SNG9_ROSCH; Putative transcription factor WRKY family
STRINGXP_004308041.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-51WRKY DNA-binding protein 27