PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna13173.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 431aa MW: 46344.8 Da PI: 4.9113 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 229 | 287 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+edp+++++tY g+H+h+ mrna13173.1-v1.0-hybrid 229 SDLWAWRKYGQKPIKGSPHPRNYYRCSSSkGCSARKQVERSNEDPNMFVVTYCGDHTHP 287 799************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-31 | 216 | 289 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.605 | 223 | 289 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-26 | 224 | 289 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-38 | 228 | 288 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-26 | 230 | 287 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MEDDDWDLYA VVRSCKTVTT TKASTTSTTP NPVHYDGSEP SWIWDWVKRE EVVETHIPPA 60 GFSNLESSAV NAFYGLEEFY QPFLPSPTVD DTTTTTATSN YAPAGSIIPN STTSFISNFG 120 GGSTSSGQQQ LQQQQNNFLP ANTKSPHFNP GFTPVSGIGR FPEQHLLKQP KLEKSENPEE 180 VVPMLKPVAF VGPSMPTLQV PAHLIRPRKR KSPVKKMVCH LTAENLSSSD LWAWRKYGQK 240 PIKGSPHPRN YYRCSSSKGC SARKQVERSN EDPNMFVVTY CGDHTHPRPT HRNSLAGSTR 300 TKAAFTTTSK LPESSPPVQL LPAAQGGGDD HDDEQGAANN NSGDGDKASE EAEDEEIEED 360 EEDEEFVVSS EEDIFLGMKQ LGRTGSGGST LGSLAAGASG DGFSTKQSNL GSSWGAGCSS 420 SAEATVSGGC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-20 | 212 | 290 | 3 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-20 | 212 | 290 | 3 | 80 | Disease resistance protein RRS1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna13173.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308041.1 | 0.0 | PREDICTED: probable WRKY transcription factor 27 | ||||
TrEMBL | A0A2P6SNG9 | 0.0 | A0A2P6SNG9_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004308041.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6794 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 5e-51 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | mrna13173.1-v1.0-hybrid |