PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13118.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 369aa    MW: 41289 Da    PI: 4.68
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13118.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20124173255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +g+W+AeIrdp   gkr r +lg+f+taeeAa  +++a+ kl+g
  mrna13118.1-v1.0-hybrid 124 KFRGVRQRP-WGKWAAEIRDP---GKRVRLWLGTFDTAEEAAMVYDNAAIKLRG 173
                              89*******.**********9...557*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.7E-31123181IPR001471AP2/ERF domain
CDDcd000183.41E-34124180No hitNo description
PROSITE profilePS5103223.709124181IPR001471AP2/ERF domain
SMARTSM003806.3E-39124187IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22124181IPR016177DNA-binding domain
PfamPF008474.4E-13124173IPR001471AP2/ERF domain
PRINTSPR003671.9E-10125136IPR001471AP2/ERF domain
PRINTSPR003671.9E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MELESSSFLC PIKYTQHRNT TKKLTKPSRK VEPGTSIAPK IVRISMTDHD ATDSSSDEEE  60
GEFYFGRRRV KKYINEISIE TDLRTSPVIT NNGRKRPALE TRPATRRPAQ KTTPCQPANG  120
GNRKFRGVRQ RPWGKWAAEI RDPGKRVRLW LGTFDTAEEA AMVYDNAAIK LRGPDAQTNF  180
SSPPQIVVTA ADSVDAKNIV NEVEIEPETT TPNVTVSVSG YDSGEETHHL SSPTSVLQFR  240
THSMDDAEQM EKPSLQPEPA TEKANHVQEC QVQQQLPTVL PYMEEEQEDG FRFPTPESPI  300
FESPLFYESP FFDDTAVPGP LMFDDFSDLF RMDTFGPSSF SAQTTSSMMC QADDCFQDIF  360
GSDPLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20123180159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-20123180462ATERF1
3gcc_A6e-20123180462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13118.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308016.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A3Q8TED90.0A0A3Q8TED9_FRAAN; Transcription factor ERF52
STRINGXP_004308016.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-55cytokinin response factor 4