PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13108.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 373aa    MW: 40957.9 Da    PI: 7.1598
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13108.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-29155216159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp ++eitY+g+H+++
  mrna13108.1-v1.0-hybrid 155 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDPMILEITYRGRHTCT 216
                              59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-28149217IPR003657WRKY domain
PROSITE profilePS5081122.825150213IPR003657WRKY domain
SuperFamilySSF1182901.06E-25154217IPR003657WRKY domain
SMARTSM007744.1E-42155217IPR003657WRKY domain
PfamPF031067.3E-27156215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDKYHNMGVN WEQKTSLVNE LTQGRELARQ LQIHLNATPT LNPSASSQTA LAREVLIQKI  60
ISSLEKALSM LSSSSSSPQI AVAVEELHQQ QPTFTVAAAT GVVTIRMANS PPSLNGSPRS  120
EDSDDHKDPS KKRKVPARWT KQVRVTSGMG LEGPLDDGFS WRKYGQKDIL GAKYPRGYYR  180
CTHRNVQGCL ATKQVQRSDE DPMILEITYR GRHTCTQAAS TTVTSPPPKP MSPLPEQKPE  240
PPKINHQPQH NMLLSHPEGL RVITEGLDTS HDRRDELVFS SFNNNYVGNF SPPLTMPTAS  300
TSGTNYFSVL SQQDFGGSQN MQISAAAEPH DIISAATSAT NSPTVGIDFP FAQADHQILY  360
PNFTFDDPGF FP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-20155215868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13108.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308010.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S5SLA90.0A0A1S5SLA9_FRAVE; WRKY transcription factor 59
STRINGXP_004308010.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-51WRKY family protein