PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna13035.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WOX

Protein Properties

Length: 276aa MW: 31099.5 Da PI: 5.2207

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna13035.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.4	9.2e-22	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lF + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ mrna13035.1-v1.0-hybrid 91 RQRWTPTPVQLQILEQLFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	102.4	3.1e-33	90	153	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq mrna13035.1-v1.0-hybrid 90 ARQRWTPTPVQLQILEQLFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 153 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-18	85	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.159	87	152	IPR001356	Homeobox domain
SMART	SM00389	1.0E-14	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-19	89	155	IPR009057	Homeodomain-like
Pfam	PF00046	1.5E-19	91	151	IPR001356	Homeobox domain
CDD	cd00086	1.11E-12	91	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEWDKQHQQK EQEIDGNGNG NGNGGVGFVK VMTDEQLETL RKQIAVYATI CEQLVEMHKN 60 LTAQQDLAGV RMGNLYCDPL MTSSGHKITA RQRWTPTPVQ LQILEQLFDQ GNGTPSKQKI 120 KEITSELSQH GQISETNVYN WFQNRRARSK RKQQNATSNN AESEVETEVD SPKDKKKGPQ 180 DQILQSQQNI SAQRAEDLCF QNPEMSSDLH FLDPQGIKED KMFASSSDLR LSRGLGHMSF 240 YDEVLSSSRG NELMTGKMEV GGSYNLFQQA EDYSM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna13035.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004287723.1	0.0	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	O81788	9e-92	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A2P6RL80	0.0	A0A2P6RL80_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004287723.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-94	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	mrna13035.1-v1.0-hybrid

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]