PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13017.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 335aa    MW: 36193.7 Da    PI: 10.0698
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13017.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-10115158447
                              S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              WT+ E++++v++v + G+g+W+ Ia  + k+++++q++ +  +y
  mrna13017.1-v1.0-hybrid 115 WTQKEHDQFVEGVSKCGMGNWTGIAIWFVKTKSREQVRKYAEDY 158
                              **************************************997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.076110163IPR017884SANT domain
SMARTSM007171.7E-5111161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-6113158IPR009057Homeodomain-like
SuperFamilySSF466892.32E-9115163IPR009057Homeodomain-like
PfamPF002492.6E-8115158IPR001005SANT/Myb domain
CDDcd001674.91E-8115159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAPEIIDLTV DSPPSSPTHP HHPNNPSSSS TASSAAAAMP NYPPRCRAGR PRSNYCYKGF  60
IRTNQVKQQS LAVRPTPATA CPSRLRYHNN VHRYSAGTQT MRQGGQSLPV SDALWTQKEH  120
DQFVEGVSKC GMGNWTGIAI WFVKTKSREQ VRKYAEDYFM RVRSTATRAT RYIQKDPSSV  180
GPSDNNDIMV NVAPRAKNPA SRHLRRLISK GLGGLRNPRS NNMVHQSSGG PVLLRGPESA  240
PGQQLVTVSA PSFVSIPVFP APSAVPVSVS VPDTVLLLSS WRKPPYMFSR FPAEGPVLLP  300
PAEGESSCSS SGRGDHGDGE ADAENEINLE LTLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna13017.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461435.10.0PREDICTED: uncharacterized protein LOC105350612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.19e-11MYB_related family protein