PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12983.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 517aa    MW: 59045.4 Da    PI: 7.1313
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12983.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR195.56.1e-3075169291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                              fYn+YA+++GFs+r+s s++s+r+g i++r fvC keg+r ++++k     + + +r+raetr+gCka+l+vk + +g w+v+ ++
  mrna12983.1-v1.0-hybrid  75 FYNSYARRIGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRMDKNDKrgnecDGRVKRPRAETRVGCKAMLVVKIQGSGGWVVSCFV 160
                              9***************************************99998889999899999***************************** PP

                     FAR1  83 leHnHelap 91 
                              +eHnHel+p
  mrna12983.1-v1.0-hybrid 161 KEHNHELVP 169
                              *******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-2875169IPR004330FAR1 DNA binding domain
PfamPF044344.5E-10293339IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.522305341IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-6316343IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEFEPLSLGN EVVEFDMIGL VDIDHHPVDD IDIFDDSLAV VGSNSIGLPY IIEGESNLEP  60
YEGMEFESEE AAKAFYNSYA RRIGFSTRVS MSRRSRRDGA IIQRSFVCAK EGFRMDKNDK  120
RGNECDGRVK RPRAETRVGC KAMLVVKIQG SGGWVVSCFV KEHNHELVPP DKVHCLRSHR  180
HVSGTAKSFI DTLQGAGIGP SGIMSALIKE YGDISKLFVR QYEKALESRY EKEMKADYDT  240
IKTAPILKTP SPMEKQAGER YTRKLFMKFQ EELVETLTFL ATKVEDEEAG YIYQVAKFGE  300
SHKAYFVRFD VHEMKAFCSC QMFEFSGLLC GHILTVFRVT NVLTLPSHYV LKRWTRNAKS  360
DVILEEHVSN LLNRSQELLT VRYNNLRHEA LKYVDEGVQT VEIYNVAIAA LHEAANKVAH  420
ENKNGGRLVS LNKIGRDNDL HWGCQANGDH KWGLETLSPD DQDKKIKKLS RQLERAQRKC  480
EVYRTHLFLV LKDIEEQKLQ LSVKVQDIRI EMKENY*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12983.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289021.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL83e-98FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2P6RL450.0A0A2P6RL45_ROSCH; Putative transcription factor FAR family
STRINGXP_004289021.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]