PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12968.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 461aa    MW: 52711.3 Da    PI: 5.8367
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12968.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.67.1e-07237285147
                     FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk 47 
                              +fY+ Y+  +GFs+rk+k+ k   +  + +++r ++Cskeg+ ++ +++
  mrna12968.1-v1.0-hybrid 237 QFYSYYGFIMGFSIRKNKMDKLvvNGVEVVVRRSWNCSKEGYCKQLRNN 285
                              6********************9555556799**********99887766 PP
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MRLHRPTCLS GHLHVVSKDS TVSSGIHGSV CTPHMFSDVS LVHWQPQNQI HTRSEREESF  60
DVETQEHDSL AELKLPYLLS VVFHGIVMAG LPSKLNQTFL QSCSYTQNVT ITIIIRMNID  120
PEIDDGGLRF SKEKYYQQTD SDGKESDIAN VTEDCDDYKE EAKSNIEKGD SGKFVEDKIG  180
MDSNKCVNDL EEGVKVGGLR AVFETDWFLH LEGKNMKTLK LEDIEDISFR NLDEAEQFYS  240
YYGFIMGFSI RKNKMDKLVV NGVEVVVRRS WNCSKEGYCK QLRNNKQPPF EYEEGGKIKR  300
NVFSDKYHNH ELAQVSERYL LRSNRHVLIQ DIYEVQALRE AQVSTSAAYD YLLKQSGGAE  360
FVGFLLKDLY NRLDAEKKIN KQHGDAEAAV NWMRLKGQED PLFFARYTKD AEGRLSSLFW  420
RDHTSLLEYE TYGDVLGILT AWSNSVCIPH SFLHCKTITG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12968.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1761223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-11FAR1-related sequence 5