PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12958.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 480aa    MW: 52807.1 Da    PI: 6.5134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12958.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84.1e-13305355555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h+++Er RR++i +++ +L+el+Pk+ ka+s+  +Ka++L + +eY+k Lq
  mrna12958.1-v1.0-hybrid 305 HSIAERLRREKIADRMKNLQELVPKSNKARSTFTDKASMLDEIIEYVKFLQ 355
                              99***********************77***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.30.108.3E-61664IPR009071High mobility group box domain
CDDcd013903.22E-51662No hitNo description
SuperFamilySSF470959.29E-71663IPR009071High mobility group box domain
CDDcd000834.04E-11298359No hitNo description
SuperFamilySSF474591.24E-14298364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.955300354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15302364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-12306360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MKKPGRKKPC RRRVLFTFID EFRLKYWEEH PNQSAAARKA AVEKWKSMSK SEKASYTAMV  60
RKRSSSWTDV DVKERSCLDC YENPPTNEML LSSIGVGIIE DDSNNSATNL SNSNQSMESM  120
AAQSANSSVA HEFESDAQDN GNNCSANFSN DQMGLHYDMD GNMVRSTSVS CLEPQNVRCN  180
CCEQSVFQRL NGDFENPSPI SQLWPLQAYE GVSSSLCPPG MGQQKLCSYS SNDIYELSDL  240
VTTEKVKQEM GNYPLPTFAS GPQIPMAMTG LQSFPQTTST SPSAECIGPR KPRIRARRGQ  300
ATDPHSIAER LRREKIADRM KNLQELVPKS NKARSTFTDK ASMLDEIIEY VKFLQQQVKV  360
LSARRLGATG AKGTNGMSDF PSLGHDISFN EIAFEQVLKL METDVTKAMQ YLQSKGLCMM  420
SIALANAILT EKESSPPPDS AENSKNSGFT DDGFVHNPSS SSSSNSTTLP GTDQAAANP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12958.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461142.10.0PREDICTED: uncharacterized protein LOC101298168
TrEMBLA0A2P6RKY60.0A0A2P6RKY6_ROSCH; Putative transcription factor bHLH family
STRINGXP_004289014.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150611314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.16e-48LJRHL1-like 3