PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna12934.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 421aa    MW: 47257.9 Da    PI: 4.8149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna12934.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM446.7e-14111232128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              pp f F+Ptd  l+  +L ++++g++l++ + +++ d++   P dL  +  +++e++e+yfF +++++          t    Wk 
  mrna12934.1-v1.0-hybrid  11 PPWFIFRPTDTRLIRTFLIPRIRGQDLPM-NDFARRDVFADPPLDLAiAeGYSEEKQEIYFFNQTSRR----------TP--HWKP 83 
                              56789************************.569999**********8542444566699**9886553..........33..5*** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              t +++++++++++++g kk   fy+  ++ g+  +W +++y++
  mrna12934.1-v1.0-hybrid  84 THRSEDLIKSGDTVIGRKKK--FYH-AQNPGKTIKWYLDQYTA 123
                              *********99999****97..563.45556889*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-1610129IPR003441NAC domain
PROSITE profilePS5100514.10510138IPR003441NAC domain
PfamPF023651.2E-711122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MANENSPAKP PPWFIFRPTD TRLIRTFLIP RIRGQDLPMN DFARRDVFAD PPLDLAIAEG  60
YSEEKQEIYF FNQTSRRTPH WKPTHRSEDL IKSGDTVIGR KKKFYHAQNP GKTIKWYLDQ  120
YTAEGENSDV AVYKLHTGRE PAQSLYTAEA QNQNLTVPPP QSGSSLLPVL PCNPPLLQQE  180
YSQWNHSLQH NGSSPLLQQA YSPWNPMDLQ AFSQWNESLP QHNGSSALPL PEWNPPLPYN  240
GLSSLPLPQG NPPFLQQDNT QTGFPTDWSE SGLLQQILYS NQPTNQSQNP LPQGNPPFLQ  300
QDNTQTGFPT DGSAVLSFPT QQYVFQPEDS GQHLQEASTA GNPVLQDGSA LPPYPSQQDA  360
FQPEDSGHLG SQQILHANIQ GNPQNIFWSD FYQYYLTQLH NNPNANTNND QPSSSNPPEH  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna12934.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470792.10.0PREDICTED: uncharacterized protein LOC105353406
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3406922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.24e-10Arabidopsis NAC domain containing protein 87