PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna12906.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 380aa MW: 43433.7 Da PI: 10.1581

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna12906.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.9	1.4e-17	46	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY +YAk +GF vr+++++ s + g+it+ ++vCs +g+r+ e+ + +++ +r+++etr +C + +kv+ + + ++v + + mrna12906.1-v1.0-hybrid 46 SFYYAYAKVMGFGVRQNYKRLStITPGKITSLRLVCSAQGQRDVERMTnKKRVHRQKKETRFNCPCLFKVRYFNnIDAYVVVGFIT 131 59*************99998557799**********9988873555677999**********99899***** PP FAR1 84 eHnHela 90 +H+H+la mrna12906.1-v1.0-hybrid 132 HHTHPLA 138 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-15	46	138	IPR004330	FAR1 DNA binding domain
Pfam	PF08631	5.5E-8	315	354	IPR013940	Meiosis specific protein Spo22/ZIP4/TEX11

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051321	Biological Process	meiotic cell cycle

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDGPREPSAF KQSDGNEMEY KGIQYDKLST EDIKGQKFKT MEEAESFYYA YAKVMGFGVR 60 QNYKRLSTIT PGKITSLRLV CSAQGQRDVE RMTNKKRVHR QKKETRFNCP CLFKVRYFNN 120 IDAYVVVGFI THHTHPLAQA HERCLLTPHI SVQDSHVKFP AFLPWQSSPP CSTTYKTGVK 180 WHELRKFDLA SSCFERATDL LSKIGIDTIS DVGEKKLFLD LNIARSKTAR KVSDRNLAVA 240 LLNRAKSLLF GSPEHYKTLA NQYSVFRKSR DGRDGWSRDG ERSVFRATVP RQRQRGGKGF 300 SQGSWGELQV VALFSGEVAA KQRTAMHAVL WNCDADHFRL KDYVTSVDLF EKAMMYIPFD 360 IENRILRVRA MGFYAFGGQ*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDGPREPSAF KQSDGNEMEY KGIQYDKLST EDIKGQKFKT MEEAESFYYA YAKVMGFGVR  60
QNYKRLSTIT PGKITSLRLV CSAQGQRDVE RMTNKKRVHR QKKETRFNCP CLFKVRYFNN  120
IDAYVVVGFI THHTHPLAQA HERCLLTPHI SVQDSHVKFP AFLPWQSSPP CSTTYKTGVK  180
WHELRKFDLA SSCFERATDL LSKIGIDTIS DVGEKKLFLD LNIARSKTAR KVSDRNLAVA  240
LLNRAKSLLF GSPEHYKTLA NQYSVFRKSR DGRDGWSRDG ERSVFRATVP RQRQRGGKGF  300
SQGSWGELQV VALFSGEVAA KQRTAMHAVL WNCDADHFRL KDYVTSVDLF EKAMMYIPFD  360
IENRILRVRA MGFYAFGGQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna12906.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011470682.1	1e-111	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004309150.1	1e-110	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-08	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna12906.1-v1.0-hybrid